AMCG00020177


Basic Information

Item Value
gene id AMCG00020177
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12519764 ~ 12542261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020177
ATGGCGCAGTCCTGGGCTGACCACCTGCTGTCAATCAAAACCATGCAGCATAGTGACACTGAGAACGGAGAGAACCTCTACTATGCCTGGAGCTCCTCCCCCAAGAACCTGACAGGGAAGGAGGCGGTGGACAACTGGTACAGTGAGATAAAGGACTACAACTTCTGCAACCCTGGCTTTGGTGGCAACACGGGTAAGGGTGTCCGTAAGGGTGTCCGACACAAGCCCGCCAGTCAGGATCACGAGGAAGTGTGGGAGGGGAAGGCCGCTGCACCAGGCTATCTCTCACATGGAGTGGAGCAGCGCGGGGCCAAGGAGCCGGGCAGCTGGAGCGTTGGCAGGAGCTCACTGCCTCAAGACAGAGCCAAAGCCAGGCAGTTCACATGGCCTGCATAA
>TU76875
tgtgtattttattatttaaaatatttttttcaaattaaactttaGAGAAAGTAAAACAGACAACTGTGAAGCAGCACAGAGGTGAGAGAAATGCCGTCTCGGATCAGTAGCAAGCACATTAATTGAAAGTAGATCCTCTTTGTTCAGAACAATTAAATTCACATCGGGTTGAGCCCAGAAATTGCATGAATGTAAAAGGAGACAGGCCCACTTCCTGCAGGTTAAAAAGCCAGAATTGTTagcaaacatacaaagaaacaaagggCCTCATCTGGGTGTGACTGGGTGTGAAAGGGCTCCTGAACAAAAGTATTGACGGACTAGGGAGGatcaatcattattattattattattaataataattaagtcaTTTAGCACATGCATTCATCCAAGTTgacttgcatgtttttttttccagccatGGCTAACATGCAGTGctctatacatacacacaatcgCAGATTAATGTGAAATACAGAAGCTTAAAATGTTTATCCACCATGGGAGATGAAAACGAAAGAGCAAGATGATCAAATCTAATATTTTATATCCACTACTAAATCTatcttgaataaataataatttaaaaaaattatagaCCCTATTAATTTTTTGGACTCTCAAACTACAATTGAATGTATGACTAATCAACATAACATCAGGTAATAGATTATAATTAAAacctgcaattaaaaatatcaggCTTTATCATATGAAAATTAATATGTCTGTGATCATATCAGTTAATAGAATAAAACCCACATTACTTCACACGAACACGCTTGTTTTGATTCTTGCAGCCAATGGGACCCCTTGAAGCTGCCCTTCTAACATCACAGCTTGATGTCACACGGAcggtttttgtgttttctttaaaacatataaacttCTTGAttactatttattaataaaaacatccaaTGCGTTTTAtactgcaatattattttatacaatgtaaaattattctaaattttaatataatatttaactCTGGATATGGGAAGTAAGGTTTGGGACGAAAAAAGTCAGGGGAAAAGTTTAGGTCAATTAATACTTGAATTGTAACCAACTTTAAgcttatttgattaaataaataaaaaagattgaCCAGCCTATTACAAACTCAGAATCTTATATTTGTGTGGGGTATATAATCAATTTGATAggctttgttgtatttttaccCCTACAGTttgtataacattaaaaacattgataGATCCAGTACCCTAGATAGTGTGAAAGCATTAAATCCCCAAATTTgtatatgatttgtatttttctgactGGGCCTCTCAAACAATTTAGCAGCATAATGCCTCTGGTGaaaggtcaggggtcagggctCATGGGTCAGGACCGAGCTGTCAGTGAGGTATACTGTGTGTGGAGGGTTCCTGAAGCACCTTTTTCATGTGAACAGGCCCCAGATCACAGCCagtctcctctccctctctctctctctctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctcgctctgtctctctctctctctctctctcgctctgtctctaGCCCCTGGCCCCCTTGGACAGAACATTGTCCTGGAAGTAGCCCTTGTTGGTGATGTTGCCGGGGGGATTGTAGAATGCCACAGAAATGAACATTCCATTTCCATCGGTGGCCAAGCCCAGCCCCACCTCCTTGGAGGATCGCCACACCATCTGAGTGAAGTTccctgggggagagagggagagagagagagagagagagagagacagagagagagagagagagagagagaggcagagcagCAGACCAGCAGACCAGCAGACCAACGAAGCTCTTCAGTGCTGATCGATCACAAGCccgaaaaacacagaaaagtatCCGCAGttCTCCGGAATACCAAAACAATGGCAGaCGACAAGCGCTCCAGCTTTGAGAAAGAGTTCCTGGACACCCACAACACCTACAGGAAGAAGCATGGAGCCCCGCCCCTGACCCTGAGCCGCAGTTTGTGCCAATCAGCGCAGTCCTGGGCTGACCACCTGCTGTCAATCAAAACCATGCAGCATAGTGACACTGAGAACGGAGAGAACCTCTACTATGCCTGGAGCTCCTCCCCCAAGAACCTGACAGGGAAGGAGGCGGTGGACAACTGGTACAGTGAGATAAAGGACTACAACTTCTGCAACCCTGGCTTTGGTGGCAACACGGGTAAGGGTGTCCGTAAGGGTGTCCGACACAAGCCCGCCAGTCAGGATCA
>TU76877
AGGTATAGTACAGGTGTAACCGTGTGCACAGGTGTAGCTGCCAGATTCCCGGCTCTCACAGGACGGATACCTTTGTGTCTCTgctacacactgactgacctaCTGAgcgattgactgactgactgactgatctGCAGACTACTGTCCGCAGTCCCACACTGACTGACTTGACTGTGACTTTCGGACTGGCTGGACTGTCGCTCTCCTGCTCAGGAAAGAACAGCAGTCATGGttCTCCGGAATACCAAAACAATGGCAGaCGACAAGCGCTCCAGCTTTGAGAAAGAGTTCCTGGACACCCACAACACCTACAGGAAGAAGCATGGAGCCCCGCCCCTGACCCTGAGCCGCAGTTTGTGCCAATCAGCGCAGTCCTGGGCTGACCACCTGCTGTCAATCAAAACCATGCAGCATAGTGACACTGAGAACGGAGAGAACCTCTACTATGCCTGGAGCTCCTCCCCCAAGAACCTGACAGGGAAGGAGGCGGTGGACAACTGGTACAGTGAGATAAAGGACTACAACTTCTGCAACCCTGGCTTTGGTGGCAACACGGGTAAGGGTGTCCGTAAGGGTGTCCGACACAAGCCCGCCAGTCAGGATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020177 False 396 mRNA 0.58 4 12535766 12542261
TU76875 True 2287 TUCP 0.41 6 12519764 12537752
TU76877 False 605 TUCP 0.54 4 12535538 12537752

Neighbor

gene id symbol gene type direction distance location
AMCG00020169 NA coding upstream 37859 12479904 ~ 12481905 (+)
AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding upstream 66979 12448768 ~ 12452785 (+)
AMCG00020170 NA coding upstream 88612 12428416 ~ 12431152 (+)
AMCG00020172 NA coding upstream 124724 12381813 ~ 12395040 (+)
AMCG00020166 NA coding upstream 148052 12368773 ~ 12371712 (+)
AMCG00020176 NA coding downstream 20899 12563160 ~ 12564443 (+)
AMCG00020182 NA coding downstream 108898 12651159 ~ 12651764 (+)
AMCG00020181 NA coding downstream 109955 12652216 ~ 12654743 (+)
AMCG00020187 NA coding downstream 122647 12664908 ~ 12690345 (+)
AMCG00020191 nrarpa,nrarp coding downstream 192614 12734875 ~ 12735213 (+)
G61435 NA non-coding upstream 13165 12417810 ~ 12506599 (+)
G61440 NA non-coding upstream 15165 12484377 ~ 12504599 (+)
G61434 NA non-coding upstream 51471 12414999 ~ 12468293 (+)
G61338 NA non-coding upstream 390193 12126842 ~ 12129571 (+)
G61336 NA non-coding upstream 503017 12016496 ~ 12016747 (+)
G61460 NA non-coding downstream 40000 12582261 ~ 12585656 (+)
G61568 NA non-coding downstream 287711 12829972 ~ 12852064 (+)
G61588 NA non-coding downstream 455589 12997850 ~ 12998227 (+)
G61650 NA non-coding downstream 794735 13336996 ~ 13338088 (+)
G61668 NA non-coding downstream 798692 13340953 ~ 13341315 (+)
AMCG00020171 rpl12 other upstream 104813 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1219732 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1550166 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1764389 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 2020258 10480534 ~ 10499506 (+)
G61491 NA other downstream 73531 12615792 ~ 12619817 (+)
G61675 NA other downstream 807416 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1244753 13787014 ~ 13792944 (+)
G61894 NA other downstream 1290909 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 1321216 13863477 ~ 13872645 (+)

Expression


Co-expression Network