AMCG00020178


Basic Information

Item Value
gene id AMCG00020178
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12550570 ~ 12562984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020178
ATGCTCCCAAACCTATTAAGGAAAAAAGTGTGGGTGTTCGGGGGCCTGGGTCAGCTGACGGACGGGCTGATCGGGCAGGACGACTTCCTGCAGACCCATCAGTACCGGATGTGGCCCGGGTATGACTACGTGGGCTGGAGAAACGGCAGCATGGGGCTGGGCTACGTGGAGATGGAGTTCACCTTCGACCGGCAGAGGAACTTCACCAGCATGAAGGCAAGGAGAGAGGGGGGCTGGGATGGAAGGACGGGTGAAGAGCCCCAGTTCTACCCCGTGCTGGATGACCGGAACCCGAGCGCACGCTTCGTCACGGTGCCGCTGGACGGGCGGGGGGGCAAAGCCCTGCGCTGCCGTTTCTCCTTTGCTGACACCTGGATGATGATCAGCGAAATCTCCTTCCAGTCTGAGACCACGCCCACTGAGAAGGATCACCATGACGACGAGAGCACCTCGGCCCTGATTGGTTGCCTGGTGACCATCATCCTGTTGCTCTTGGTGATCATCTTCCTGATCCTGTGGTGTCAGTACGTGTGCAAAGTGATGGAAAAGGGCCCTCGCCGTATTCTGGATGAAGATGTGACCGTGCGCCTGTCCTCCTGCAGCGACACCATCGTGATCCAGACCCCCCATGCCGAGCCCAGCTGTCCCGAGGGGGACCCCCCCTATGAGCGGTTCCCCCTCAGCTGTACATTTCCCTGTtccctctttctccttttctctatctctctccctccctgtgtctgtctctgtccttcAGCTCTTGTCTTCAGTAACCCAGCCTATGATCTGTTCCTCTCCACCTCCCCACCCCTCACTGTGCTATCCCGGCCCTGCCCCACAGCCACCCCCCAGACCCCCATCAACGACCTGACGCAGGGCACTCCTCACCAGTGTTTCCACAGCAGCGTGGAGCACTACGCCGAGACTGACATCGTCAGCCTGCAGGGCGTCACCGGGAGCAACATGTACGCCGTCCCCGCGCTGACCATCGACTCGCTCACACGCAAGGACATCTCCGTCGCCGAGTTCCCACAGCAGCGCCTCCTCTTCCGTGAGAAGCTGGGCGAGGGCCAGTTCGGGGAGGTGCACCTGTGTGAGGCGGAGGGGCTGGCGGAGTTCCTTGAGGGGGGCATCCCGATTCTGGAGCGGGACGGCCGGCCGGTGCTGGTGGCCGTGAAGCAGCTGAGAGCCGATGCCACCAAAAATGCCAGGAACGACTTCCTGAAGGAGATCAAGATCATGTCCCGGCTCAACGACCCCAACATCATCCggctactgtgtgtgtgtgtgacctctgaccccctgTGCATGGTCACGGAGTACATGGAGAATGGAGACCTCAACATGTTCCTCATGAGGGACCTGCTACACATGGCAACGCAGATCTCCTCGGGGATGCGGTACCTCGCATCCCTGAACTTTGTGCACAGAGACCTGGCCACGCGCAACTGCCTGGTGGACCGGCGGCTCACCATCAAGATCGCCGACTTCGGCATGAGCAGGAACCTGTACAGCAGCGACTACTACCGCATCCAGGGCCGTGCTGTGCTGCCCATCCGCTGGATGGCCTGGGAGAGCATCCTGCTGGGCAAGTTCACAACGGCCAGTGATGTGTGGGCATTCGGGGTGACCCTGTGGGAGGTCTTCACACTGTGTAAGGAGCAGCCCTACAGCCTGCTGACCGACGAGCAGGTGATCGAGAACACGGGCGAGTTCTTCAGGAACCAGGGCAGGCAGatcttcctgtcccCGCCGCCCCTGTGTCCCCCGTCTCTGTTCGAGGTGATGCTGCGCTGCTGGAGTCGAGACACCAAGGACCGGCCGCCCTTCCACAGGCTGTACCAGGCCCTGCGAGAGCACACTGCCTAG

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05125 DDR2, TKT, CD167b; discoidin domain receptor family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020178 True 1869 mRNA 0.61 12 12550570 12562984

Neighbor

gene id symbol gene type direction distance location
AMCG00020179 NA coding downstream 20977 12516806 ~ 12529593 (-)
AMCG00020175 pole3,LOC107587393,LOC107693859,LOC107597112,LOC107691032 coding downstream 132342 12414984 ~ 12418228 (-)
AMCG00020174 NA coding downstream 141618 12395555 ~ 12408952 (-)
AMCG00020168 NA coding downstream 168821 12376133 ~ 12381749 (-)
AMCG00020167 NA coding downstream 175422 12371831 ~ 12375148 (-)
AMCG00020185 NA coding upstream 34675 12597659 ~ 12598234 (-)
AMCG00020184 NA coding upstream 55616 12618600 ~ 12619814 (-)
AMCG00020186 NA coding upstream 78723 12641707 ~ 12646647 (-)
AMCG00020183 NA coding upstream 95329 12658313 ~ 12664512 (-)
AMCG00020188 NA coding upstream 190873 12753857 ~ 12759226 (-)
G61477 NA non-coding downstream 51144 12493801 ~ 12499426 (-)
G61470 NA non-coding downstream 98777 12430802 ~ 12451793 (-)
G61424 NA non-coding downstream 155542 12394285 ~ 12395028 (-)
G61302 NA non-coding downstream 622706 11925564 ~ 11927864 (-)
G61273 NA non-coding downstream 827156 11713501 ~ 11723414 (-)
G61488 NA non-coding upstream 15687 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 156383 12719367 ~ 12743437 (-)
G61558 NA non-coding upstream 241686 12804670 ~ 12805433 (-)
G61593 NA non-coding upstream 444438 13007422 ~ 13007666 (-)
G61696 NA non-coding upstream 774032 13337016 ~ 13338101 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 40633 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 498359 12001700 ~ 12052211 (-)
G61269 NA other downstream 848925 11695691 ~ 11701645 (-)
G61170 NA other downstream 1794151 10755468 ~ 10756419 (-)
G60746 NA other downstream 3710625 8839211 ~ 8839945 (-)
G61589 NA other upstream 434854 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 654012 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1032534 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 1101092 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 1242036 13805020 ~ 13808333 (-)

Expression


Co-expression Network