AMCG00020180 (tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097)


Basic Information

Item Value
gene id AMCG00020180
gene name tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12484369 ~ 12509937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020180
ACTGTAAGTTATGTACAAGGGCAGAagtttgcactgtatttttggcATAAGTTACACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGAGCTAAGAATTTTCAACACCGCTTCAACATGAGGGAGATTGTCCATCTGCAAGCCGGCCAGTGCGGAAATCAAATCGGCGCCAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCTGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTAGAGCCTGGCACCATGGACTCTGTGCGGTCAGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCTCGTGCCGTTCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTCGGGCAGATCTTTAGACCCGACAACTTTGTGTTTGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTTGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGTGGCAAGTATGTGCCCCGTGCCGTTCTCGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCTGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGG
>TU76915
GTGACCGATGAGCCGGCCCGAAGCACCAATCGCAGCCTCGGGAATCGGGGAAGGGGCGGCCGTGTGGGCGGGGTCTGAGTGAGGTCCTGgggatttttttgttaagaTTGGCGCATAAAACACAGACTGCAGCTGCTGAGACAAcgtgtgtttttctgtctctgatttttttttactgcgtCACCCGAGAATTTTCAACACCGCTTCAACATGAGGGAGATTGTCCATCTGCAAGCCGGCCAGTGCGGAAATCAAATCGGCGCCAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCTGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTAGAGCCTGGCACCATGGACTCTGTGCGGTCAGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGCCA
>TU76916
TCTCAGAGTAGCCAATGACAGAGGCGTTCTCTGAGTTGGTATAAAAGAGCAGCAGCGGACTGTAAGTTACATTCAAGGGTAGAAGTTTgcactgtgtttgtgctgtttgtTAACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGCGCTAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCTCGTGCCGTTCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTCGGGCAGATCTTTAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGCCA
>TU76917
GCGCATAAAATACGGACTGCGGCTGCAGACAGTGCGCAGATTCCTGTTTCTCTTTCAGTCTTACTGCGGCTCCTGAGCATTTTTCCACAGCATCAATATGAGAGAGATTGTCCATCTGCAAGCCGGCCAGTGCGGAAATCAAATCGGCGCCAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTTGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGCCA
>TU76919
CCTGAGTGGGCGGTGCTTAAACAGGGATGAAAAAAGAGGGTGATATATAAAGCTCGGGGCGTGAGGATTGGTTAGAGAAGCAGAGAAAGCTGTGgagttgttggtttgttttttttatttatttatttattgttcaggTGTTTGATTAAAGTTTCGACTTAAAAATGAGGGAGATTGTTCACCTGCAAGCCGGACAGTGTGGAAACCAGATCGGGGCCAAGTTCTGGGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGACCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCCCGTGCCGTTCTCGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCTGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGC
>TU76920
AAGAGCAGCAGCGGACTGTAAGTTATGTACAAGGGCAGAagtttgcactgtatttttggcATAAGTTACACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGAGCTAAGttctggGAGGTGATCAGCGACGAGCACGGCATAGACCCCACTGGGACCTACCATGGAGACAGTGACCTGCAGCTGGAGAGGATCAATGTGTACTACAATGAAGccacagGTGGCAAGTATGTGCCCCGTGCCGTTCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGC
>TU76921
TCTCAGAGTAGCCAATGACAGAGGCGTTCTCTGAGTTGGTATAAAAGAGCAGCAGCGGACTGTAAGTTACATTCAAGGGTAGAAGTTTgcactgtgtttgtgctgtttgtTAACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGCGCTAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCCCGTGCCGTTCTCGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCTGGACCCTTCGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGC
>TU76923
TCTCAGAGTAGCCAATGACAGAGGCGTTCTCTGAGTTGGTATAAAAGAGCAGCAGCGGACTGTAAGTTACATTCAAGGGTAGAAGTTTgcactgtgtttgtgctgtttgtTAACTTCAATACGATTCAAACATGAGGGAGATCGTGCATCTGCAGGCTGGACAGTGCGGCAATCAAATCGGCGCTAAGttctggGAGGTGATCAGCGACGAGCACGGCATCGACCCCACTGGGAGCTACCATGGAGACAGCGACCTGCAGCTGGAGAGGATCAACGTGTACTACAATGAAGCCTCCGGTGGCAAGTATGTGCCCCGTGCCATCCTTGTGGACCTGGAGCCTGGCACCATGGACTCTGTGCGGTCGGGACCCTTTGGGCAGATCTTCAGACCCGACAACTTTGTGTTTGGCCAGAGTGGTGCCGGAAACAACTGGGCCA

Function

symbol description
tubb4b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb).
tubb2b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 7. Orthologous to human TUBB2B (tubulin beta 2B class IIb).

NR:

description
PREDICTED: tubulin beta-4B chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020180 True 890 mRNA 0.56 9 12484371 12509923
TU76915 False 517 TUCP 0.56 4 12490698 12504677
TU76916 False 438 TUCP 0.53 4 12490698 12496740
TU76917 False 404 TUCP 0.56 4 12490698 12492565
TU76919 False 469 TUCP 0.52 4 12484369 12486334
TU76920 False 393 TUCP 0.53 4 12500424 12509937
TU76921 False 436 TUCP 0.54 4 12484369 12496740
TU76923 False 438 TUCP 0.54 4 12490698 12496740

Neighbor

gene id symbol gene type direction distance location
AMCG00020175 pole3,LOC107587393,LOC107693859,LOC107597112,LOC107691032 coding downstream 66141 12414984 ~ 12418228 (-)
AMCG00020174 NA coding downstream 75417 12395555 ~ 12408952 (-)
AMCG00020168 NA coding downstream 102620 12376133 ~ 12381749 (-)
AMCG00020167 NA coding downstream 109221 12371831 ~ 12375148 (-)
AMCG00020164 ier5l,LOC107691035,LOC107723335,LOC107740934,LOC107693861 coding downstream 276817 12206692 ~ 12207552 (-)
AMCG00020179 NA coding upstream 6869 12516806 ~ 12529593 (-)
AMCG00020178 NA coding upstream 40633 12550570 ~ 12562984 (-)
AMCG00020185 NA coding upstream 87722 12597659 ~ 12598234 (-)
AMCG00020184 NA coding upstream 108663 12618600 ~ 12619814 (-)
AMCG00020186 NA coding upstream 131770 12641707 ~ 12646647 (-)
G61470 NA non-coding downstream 32576 12430802 ~ 12451793 (-)
G61424 NA non-coding downstream 89341 12394285 ~ 12395028 (-)
G61302 NA non-coding downstream 556505 11925564 ~ 11927864 (-)
G61273 NA non-coding downstream 760955 11713501 ~ 11723414 (-)
G61206 NA non-coding downstream 1491123 10992899 ~ 10993246 (-)
G61488 NA non-coding upstream 68734 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 209430 12719367 ~ 12743437 (-)
G61558 NA non-coding upstream 294733 12804670 ~ 12805433 (-)
G61593 NA non-coding upstream 497485 13007422 ~ 13007666 (-)
G61696 NA non-coding upstream 827079 13337016 ~ 13338101 (-)
AMCG00020159 NA other downstream 432158 12001700 ~ 12052211 (-)
G61269 NA other downstream 782724 11695691 ~ 11701645 (-)
G61170 NA other downstream 1727950 10755468 ~ 10756419 (-)
G60746 NA other downstream 3644424 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 3656260 8812785 ~ 8828109 (-)
G61589 NA other upstream 487901 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 707059 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1085581 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 1154139 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 1295083 13805020 ~ 13808333 (-)

Expression


Co-expression Network