AMCG00020190


Basic Information

Item Value
gene id AMCG00020190
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12762409 ~ 12766384 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020190
GAGCCTGGTATAAAAACCTTCCCTCTGGCTCTGTAAGTTCAACTCGGTTCATTTTGCTCTAGTCATCGTCTGGTTGCTGTTAGTTGTGCTCCAGAGACAAgtgaggaagagaagaaaacagcAGACAAAAACTCAAAATGGGAtccctgctgctgtgtgtccagcTGGCTCTGCTCTGCACACTCTCTGTCAAGGCGGACGTCCAACCCCAGAAAGACTTCAACCTGCAAAAGTTCGCTGGGAAGTGGTACCGCGTGGGGCTGGCCTATGACTCCCCCGCCTTCATGCCGTACCGGGACAAACTGCGCGTGGCCATGGGGATCCTGAGGCCGATGGACAACGGGGACGTCAACGTGACCATGTGGAGCTTGAGGTCCCCCGGCTGTTACAGTCAGGTCTACGTGTACGAGAAGATGGCCGTGCCAGGACTGTTCAGCTACTTCAGCACACGCCATAACAGGGTGAAAGACATCACCATCGTGGAGACTAACTACAACGAGTACGCGCTGGTCCTCAAGCACAAGAACAGGTTGGACAAGGACTTCACACAGGTGGCTCTCTATGGCCGCACACTGAAGCTCAGGCCAGAGCTGGTGGAGAAGTTTCGGCAGTTCGCTCTGTCTCGCGGATTCTCCAAGGAGTCCATCGTGATCCCCCCCGCAGAAGAGAGCACAGCCTGGAACTCGTCAAGCCTGGGGATCACGCCAACTGTTTTCAGTGCCAAAGAGGTTCTCAATTCCactgagacaaacacacagaacaacTGGGACTAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020190 True 773 mRNA 0.54 6 12762409 12766384

Neighbor

gene id symbol gene type direction distance location
AMCG00020188 NA coding downstream 3183 12753857 ~ 12759226 (-)
AMCG00020183 NA coding downstream 97897 12658313 ~ 12664512 (-)
AMCG00020186 NA coding downstream 115762 12641707 ~ 12646647 (-)
AMCG00020184 NA coding downstream 142595 12618600 ~ 12619814 (-)
AMCG00020185 NA coding downstream 164175 12597659 ~ 12598234 (-)
AMCG00020189 NA coding upstream 281 12766665 ~ 12776416 (-)
AMCG00020193 LOC100195200,LOC107681237,LOC107715755,LOC107709843 coding upstream 15939 12782323 ~ 12790560 (-)
AMCG00020196 NA coding upstream 43090 12809474 ~ 12810528 (-)
AMCG00020195 NA coding upstream 44279 12810663 ~ 12813210 (-)
AMCG00020194 NA coding upstream 52546 12818930 ~ 12827022 (-)
G61550 NA non-coding downstream 18972 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 178661 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 262983 12493801 ~ 12499426 (-)
G61470 NA non-coding downstream 310616 12430802 ~ 12451793 (-)
G61424 NA non-coding downstream 367381 12394285 ~ 12395028 (-)
G61558 NA non-coding upstream 38286 12804670 ~ 12805433 (-)
G61593 NA non-coding upstream 241038 13007422 ~ 13007666 (-)
G61696 NA non-coding upstream 570632 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 680618 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 812025 13578409 ~ 13653379 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 252472 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 710198 12001700 ~ 12052211 (-)
G61269 NA other downstream 1060764 11695691 ~ 11701645 (-)
G61170 NA other downstream 2005990 10755468 ~ 10756419 (-)
G60746 NA other downstream 3922464 8839211 ~ 8839945 (-)
G61589 NA other upstream 231454 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 450612 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 829134 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 897692 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 1038636 13805020 ~ 13808333 (-)

Expression


Co-expression Network