AMCG00020194


Basic Information

Item Value
gene id AMCG00020194
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12818930 ~ 12827022 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020194
ATGTACCCCCCGATGAGAAAGGACTTCATATCTTTAACCCTAACTGAGCAGGACAGCCGGAACTACAACAACAGCAAGAACTGGCGCCGACAGTCCTGCTGGAGGGTCAGTCCATGTCCTTTAGGTGCTGTCTGTTACCCAGGGAACCGCTGCCCAGGCAGCCCGGTTCCGGTCCGTCTTTTGTCGGATGGTGCTCCAACTAGTGAGCCGAAAGATGCAGTGGAACCGAAATGGAAGCAGCTGTCCCGGTTGCAGCGCAGTCTGATTCTCTTCCTGCTCGCGGTGCTGGTGGTCTGTGGGATCGCAACCTACCCGAGCCTGGCAGAGCGCTGGGGAGAGCCACTGGCCTACAGAGATTACTGGTTTTACAGTACAGGACACCCTTCTTTTCAGAAGCAGAGAAAGCCTTTCCCCAACAAGCGCGGCCCGCCTGGCTTACAGCACCGCGTCCAGAAGAGAGGGAACATCTCCGAGTCGGAagtgaaggagagggagggtCCGGCGCTCAAGGGCGgagcagaggaggaagagggagagaagccGCTggtcagCTGGCACGGGGCGATGATCGAGGCTGACCAGGCCACGGAGCCTCAGCCCTCTGCCAAGGAGAACGAGGCCCCCTTGTCCTTAGACCGAGGTGTGCAAGTGCCACCTGCACCAGGGGGAGTGAGCGAGAGGCAGGAGGCTGTAGTGGAGGCCTTCAGACACGCCTGGAAAGGCTACAAGGAGTTTGCCTGGGGCCATGACGAGCTGAAGCCCATCTCCAAGTCCTATGGCGAGTGGTTCGGATTGGGCCTGACGCTCATCGATGCGCTGGACACTATGTGGATCCTGGGCCTGAAGGAAGAGTTCAAAGAAGCCAAGCAGTGGGTGTCGACAGAGCTGTCCTTCACCAAGAACGTGGACGTTAATCTGTTTGAGAGCACCATCCGCATCCTGGGGGGCCTGCTCAGCACCTACCACCTGACCCAGGACAGCCTGTTCCTAGACAAAGCGAAAGACATCGGAGCCAGGCTGATGCCGGCCTTCAACACGCCGTCCAAAATCCCGTACTCTGACGTCAACATCGGCCGCGGCTCCGCCCACCCCCCACGCTGGACCTCCGACAGCACTGTCGCCGAGGTCACGAGCATCCAACTGGAGTTCCGGGAGCTGTCCCGCCTCACGCAGGATGACCGGTACCAGAAAGCGGTGGACAGCGTGATGAAGCACGTGCACAAGTTGGAGGGCAAGCATGACGGCCTGGTGCCCATGTTCATCAACACCAACAGCGGGCAGTTCACCCACTTGGGGGTGTACACGCTGGGCGCCCGTGCCGACAGCTACTACGAGTACCTGCTCAAGCAGTGGATCCAGGGAGGCAAGAAAGAGACTGAGTTGCTGGAGGACTACCTGCAGGCGGTTGAGGGGGTGAAGAAGAACCTGCTGAGAAAGTCCGAGCCAAGGAAGCTGACCTTCGTGGGGGAGCTGTCCCACAACCACTTCAGCCCCAAGATGGATCACCTGGTTTGCTTCCTGCCCGGCACACTGGCCCTAGGGGCGCACAATGGGCTGCCGGCAGAGCACATGGAGCTGGCCCAGCAGCTGGTGGAGACGTGCTATCAGATGTACGCACAGATCGAGACTGGCCTGAGCCCCGAGATTGTGCAGTTCAACCTCATGCCGCGCAACGGGAATGATGTGGAGGTCAAGcCCGCAGACAGACACAACCTCCTGCGCCCGGAGACTGTGGAGAGCCTCTTCTACCTGTACAGGTTCACCCGGGACAAGAAGTACCAGGATTGGGGCTGGGAGATCTTCCAGAGCTTCAACAAGTACACCAGGGTCCCCACAGGAGGATTCTCCTCGATCAGCAACGTGCGAAACCCAGAGAGCCCCGACCCACGGGACAAGATGGAGAGCTTCTTTCTGGGCGAGACCCTGAAGTACTTTTACCTCTTATTCTCCGACGACTTCGACCTGATCAGCCTGGACAAGTATGTGTTCAACACGGAGGCACACCCCCTGCCCATATGGCCTTCCTCGTaa

Function

GO: NA

KEGG:

id description
K23741 MAN1B, MNS3; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020194 True 2031 mRNA 0.59 13 12818930 12827022

Neighbor

gene id symbol gene type direction distance location
AMCG00020195 NA coding downstream 5720 12810663 ~ 12813210 (-)
AMCG00020196 NA coding downstream 8402 12809474 ~ 12810528 (-)
AMCG00020193 LOC100195200,LOC107681237,LOC107715755,LOC107709843 coding downstream 28370 12782323 ~ 12790560 (-)
AMCG00020189 NA coding downstream 42514 12766665 ~ 12776416 (-)
AMCG00020190 NA coding downstream 52546 12762409 ~ 12766384 (-)
AMCG00020198 NA coding upstream 53642 12880664 ~ 12887861 (-)
AMCG00020197 NA coding upstream 62619 12889641 ~ 12898257 (-)
AMCG00020200 LOC106585428 coding upstream 102763 12929785 ~ 13017709 (-)
AMCG00020201 LOC107681248,LOC107560222,LOC107587427,LOC107690670,LOC107757972 coding upstream 202647 13029669 ~ 13033709 (-)
AMCG00020202 NA coding upstream 207067 13034089 ~ 13038065 (-)
G61558 NA non-coding downstream 13497 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 75493 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 235182 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 319504 12493801 ~ 12499426 (-)
G61470 NA non-coding downstream 367137 12430802 ~ 12451793 (-)
G61593 NA non-coding upstream 180400 13007422 ~ 13007666 (-)
G61696 NA non-coding upstream 509994 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 619980 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 751387 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 924062 13751084 ~ 13751298 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 308993 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 766719 12001700 ~ 12052211 (-)
G61269 NA other downstream 1117285 11695691 ~ 11701645 (-)
G61170 NA other downstream 2062511 10755468 ~ 10756419 (-)
G60746 NA other downstream 3978985 8839211 ~ 8839945 (-)
G61589 NA other upstream 170816 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 389974 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 768496 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 837054 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 977998 13805020 ~ 13808333 (-)

Expression


Co-expression Network