AMCG00020199 (LOC102778062,LOC101486272,LOC102199534)


Basic Information

Item Value
gene id AMCG00020199
gene name LOC102778062,LOC101486272,LOC102199534
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13075718 ~ 13079535 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020199
ATGATCCTGGCCACTATCATAGCCAACTGCATCGTCCTGGCCTTGGAGCAGCACCTCCCAGCTTCGGATAAGACCCCCATGTCGGAAAGACTGGACGACACGGAGCCCTACTTTATTGGAATATTTTGCTTCGAAGCTGGCATCAAGATCATCGCCCTGGGGTTCGTGCTCCATAAAGGCTCGTACCTCAGAAACGGCTGGAACGTGATGGACTTTGTGGTCGTCTTGACCGGGTGA

Function

NR:

description
PREDICTED: voltage-dependent N-type calcium channel subunit alpha-1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020199 True 237 mRNA 0.54 2 13075718 13079535

Neighbor

gene id symbol gene type direction distance location
AMCG00020202 NA coding downstream 37653 13034089 ~ 13038065 (-)
AMCG00020201 LOC107681248,LOC107560222,LOC107587427,LOC107690670,LOC107757972 coding downstream 42009 13029669 ~ 13033709 (-)
AMCG00020200 LOC106585428 coding downstream 58009 12929785 ~ 13017709 (-)
AMCG00020197 NA coding downstream 177461 12889641 ~ 12898257 (-)
AMCG00020198 NA coding downstream 187857 12880664 ~ 12887861 (-)
AMCG00020203 NA coding upstream 4094 13083629 ~ 13083952 (-)
AMCG00020204 NA coding upstream 13028 13092563 ~ 13110839 (-)
AMCG00020205 NA coding upstream 59637 13139172 ~ 13163646 (-)
AMCG00020210 NA coding upstream 91451 13170986 ~ 13180186 (-)
AMCG00020208 NA coding upstream 120185 13199720 ~ 13204989 (-)
G61593 NA non-coding downstream 68052 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 270285 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 332281 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 491970 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 576292 12493801 ~ 12499426 (-)
G61696 NA non-coding upstream 257481 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 367467 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 498874 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 671549 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 709856 13789391 ~ 13792931 (-)
G61589 NA other downstream 77495 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 565781 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1023507 12001700 ~ 12052211 (-)
G61269 NA other downstream 1374073 11695691 ~ 11701645 (-)
G61170 NA other downstream 2319299 10755468 ~ 10756419 (-)
AMCG00020212 NA other upstream 137461 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 515983 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 584541 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 725485 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 731878 13811413 ~ 13813003 (-)

Expression


Co-expression Network