AMCG00020209 (nelfb,LOC106579998)


Basic Information

Item Value
gene id AMCG00020209
gene name nelfb,LOC106579998
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13230008 ~ 13235396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020209
GTCGCCTGCGGTACTAAAGCGGAACCGAAGTTCCCAAGCCTTCGTGCAGCTGGGGAAGAGAGACGGGCGGACGCGAGGAGGGGACTGTTTATCGCTGCGCACACCGGAACCGGAACTTGAGCTGACTCTTTGAATGGGATTATTTAGTTGAtttggggagagagggaaaacacagagggttgttttctgttttgtttgggaGTTTAATACTTTCAAAGTTGGGAAAGAGGGACGGTGGTGCAAGATGTTCGCTGGGTTACCCGAACTGGGCATCTCGAACGGCGAGGACCTGAAGGAAACCCTGACCAACTGCACCGAGCCTCTGAAAGCCATAGACCAGTTTCAGACGGAGAATGGGGTCCTGCTGCCGTCGCTGCAGTCCGCGCTGCCCTTCCTGGACCTGCACGGCACGCCGCGCCTGGAGTTCCACCAGTCCGTGTTCGACGAGCTGCGGGACAAGCTGATGGAGAGGGTGGCGACCATCGCCGAGGGCAAGGAGGAGGATCGgtacagtaagctggaggagctgctggagaaaaGCTTCCCACTGGTGAAGATGCCATCGATACAGCCAGTCGTCATGCAGGTGATGAAACACCTGCCTAAGgtcccAGAGAAGAAGCTGAAGCAGGTGATGTCTGACAAGGAGCTGTACAGCGTGTGTGCGGTGGAGGTGAAGAGGCAGATCTGGCAGGATAACCAGGCCCTGTTTGGGGACGAGGTGTCTCCCCTGCTCAAGCAGTACATCGTAGAGAAGGAGGCGGCGCTGTTCAGCAGCGACCTCTCCGTCCTGCACAACTTCTTCAGCCTCTCGCCCAAGACTCGCCGCCAGGGGGAGGTGGTGCTGAAGCTGACACAGATGATTGGGAAGAACGTGAAGCTGTACGACATGGTCCTGCAGTTCCTGCGCACACTCTTCCTGCGCACACGCAACGTCCACTACTGCACCCTGCGCGCCGAGTTGCTGATGTCTCTGCACGACCTGGACATCAGCGAGATCTGCTCGGTGGACCCCTGCCACAAGTTCACCTGGTGTCTGGACGCCTGTATCCGGGAGAAGTTTGTTGACGCCAAGAGGGCGAGAGAGCTACAGGGCTTCCTGGATGGAGTGAAGAAAGGACAGGAGCAAGTgctgggGGACCTGTCCATGATCCTGTGTGATCCCTTTGCCAGTAACACACTGGTGCTGAGCACTGTGAGGAacctgcaggagctgctgggCCAGGATGCGCTGCCCAGGgaCAGTCCAGACCTCTTGCTGCTGCTCAGGATGCTGTGTTTGGGGCAGGGCGCCTGGGACATGATTGACAGCCAGGTCTTCAAGGAGCCGCGCCTGGATCTGGAGGTGGTGACACGGTTCCTGCCAGCCATGCTGTCCGTGGTGGTGGATGACTACACCTTCACTGTGGAGCAGAAGCTGCCCAACGAGGAGAAGAGCAGCCTGACCTACCCCAGCACTCTACCTGAGGCCTTCAGCAAgcTGCTCCTGGAGAACCGTGTGGCGTGTGAGATGGGCCTGtactacacactgcacatcGCCAAGCTCAGGAACAAGAACGCTCTGCAGAGGCTGCTGCCAGCGCTGGtgGAGTCCCACAATGACATGTCTTTTGGGGACATCTTCCTGCACCTGCTGACGGGTCACCTGACGCTGCTGTCCGAGGAGTTCGGCACAGAGGATTTCTGCAGTGCCGTGTTCGACCGCTTCCTCCTTACCTCCTTCTCCAGTAAGGAGAACGTCCACAGACACGCCCTGCGCCTGCTGCTGCATCTCCACCGCAAAGTGCTGCCGTCCCGGCTGGAATCCCTCGTCAAGACCCTGGAGCCGCCCAAACAGAGCAGTGAACCAGTGAGGGAGCTGTACACCCAGCTGACCGAGAAACTTGATTCCCAGAAGAAGAGCCCCCCCACGGCTCCCGAGCCGCCCACTCTGGACCTGGGCCTGCACCCTGTCACCGTGCCCCCTGCTGTGCCCACCACCCCCCCGCTTTGAGGGAGCACggaaaggggggagagagagagagtgttaaaGAGGATTGATCTCACCACTGTCTAAGAATGGCAAATGGGTGTGGCTCATTCGATCACTACCTTAACACACCTTCAAATCTTGTCTGACTAATTATTATTCCCCAATCAAGGGTTTCCAGAGGCTTATCTAAGGgtcaatttaaatatgtataatatttttatttttttttatataaagaaaagcattgttGAAATTTGTGTTTGAGTTTTTTATCTCAGTATGTAGGGCAGTGTTGTCTGTAACTGGAGATGTGCGTGTGTGATGACAAACCTGTAATCTGTAAAtaaagtaatgtttatttttaataattgacaGGAGGGTGAACATTGCGCAGTGTGTTGTCATAGAGCCGATGTCAAGAGATTTAGGAG

Function

symbol description
nelfb Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFB (negative elongation factor complex member B).

NR:

description
PREDICTED: negative elongation factor B

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15180 COBRA1, NELFB; negative elongation factor B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020209 True 2403 mRNA 0.55 13 13230008 13235396

Neighbor

gene id symbol gene type direction distance location
AMCG00020208 NA coding downstream 25019 13199720 ~ 13204989 (-)
AMCG00020210 NA coding downstream 49822 13170986 ~ 13180186 (-)
AMCG00020205 NA coding downstream 66362 13139172 ~ 13163646 (-)
AMCG00020204 NA coding downstream 119169 13092563 ~ 13110839 (-)
AMCG00020203 NA coding downstream 146056 13083629 ~ 13083952 (-)
AMCG00020211 LOC107584610 coding upstream 2519 13237915 ~ 13247628 (-)
AMCG00020207 NA coding upstream 20137 13255533 ~ 13273396 (-)
AMCG00020214 NA coding upstream 103157 13338553 ~ 13343605 (-)
AMCG00020215 NA coding upstream 108832 13344228 ~ 13351669 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding upstream 133252 13368648 ~ 13387997 (-)
G61593 NA non-coding downstream 222342 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 424575 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 486571 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 646260 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 730582 12493801 ~ 12499426 (-)
G61696 NA non-coding upstream 101620 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 211606 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 343013 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 515688 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 553995 13789391 ~ 13792931 (-)
AMCG00020212 NA other downstream 5496 13216996 ~ 13224512 (-)
G61589 NA other downstream 231785 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 720071 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1177797 12001700 ~ 12052211 (-)
G61269 NA other downstream 1528363 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 360122 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 428680 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 569624 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 576017 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 589293 13824689 ~ 13834729 (-)

Expression


Co-expression Network