AMCG00020210


Basic Information

Item Value
gene id AMCG00020210
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13170986 ~ 13180186 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020210
TAAGACTGccctaataataatgaacaatgCATTCAGCTCAGGCTCTTATTAAGGCTACCAGAATGATAAagcatttcaatgtatttaataaaaataggGCATCTGGACTTGAAATGTGACGTATCCGCAAAGAATGGCTCTGTGAATAGGTAACTAGACCCAGAATAGTGATCTGTATGGTAATGTGTTGTATCTCGATGTGATAGTCCCTGAGTGGGTAAGATAATACCCTGTGGGTGAACCTGGGACTGCTAACCTGGGATCACATGTAACAGTGTAGGCCCTGTATGAATGAAGGTTTTATATAAAATTGGAGAAACTTGTTGATCTTGAAGACCTTCCTATCCTCTGACATTCAAAggttaaaaattaaacacaaagaaagGAGTGGTGAGCAACGTGCACAGCTGCTGTCCCACACACAGATGAAGTGTTTCATGGCTGGttataacatgacatttattcataataattgAGACGACAGatacaaaatgcttttaattattcttctcccttctctctccttttacAAGTAGACTCAAACAATCTATCTTACACAGAAATAGCAATCAATCAAGCTGatacaaaacagtacaaatataCCAATTAACATTAGAGTATATTTGTATACTATCACCATTCATATAACTAATATTATCattgttaaatgtataatttcaatTATTACAACTTTTATTGAAGTATTTACTTATTCTCGCTTGTTTTTGAGCGATTTCCAGATTTACATGGGCTAAAAGTAGATTGgctgtacatttatttgaaatgtgttaccTCTTTCACTCCCTCTCTGCGATGGACAGATTTAGAGACCTTCAAATCCCCAGGGCCAGAGCATTATAAACTAAACTCTTGGTTTACATACTTCGTAATACCAATAAATGTATTCAGCCTCCCACCTAAATCATTTgccaacaaatcaaaacaaaaatagtatttattacactttacTTGCACAGTCACTAAAATTGTCTGTAAGAGCTACTATTTTTGatattacaaaacacaagacaTCCATGTCCTACCAGCCCTGCCACGCTTCCACCACAGCGTGAACTTCCTTAGGGTTGACACAAATCAAAAGGCACTACTAGCCCCAAATAAGTACAATTCTAGGCCAAAACCagacagattatatttttatatatatatataatatagatatagatatagtgTAAGTGATGTGAGAGTGTGGATTATGtattcaacacacacacacacacatgaacaacAAACCCACACAGCCTCTTTAGTTAGTGGATCCATagcagtaaatacatttacacaattaacacaatttgatattgttttattctacCTCCCCCTGATATTTCAGTCTGCACCTGGGGAGTCCAATAACACTAGACTCACAGACTTCTGTGTCTTAATTGGAACCATGTGGCCCCAGTGCCAATGCTGCAGCGCCACATAACCCTAAACTCAGACTCAAACTCTTCTCTCTGACCCTGTCCCAGGCGTGCAATGGCACTGGTGTTGGACAGCTCCTGGCTCAACAAGCACCTGCGGGAATACTACATGAAGCTGCCACAGCACGGCAAAGTGCAGGTCACCTACATATGGATCGATAGTACAGGGGAGGGGCTGCGGAACAAGACCCGGACGCTGGACATTGAGCCCAAGAGCATCGAGGACATTCCAGAGTGGAACTTCGATGGATTCAGCACCTGCCAGACGGAGATCGCCAACAGAGACTTGTACCTGGTCCCGGTGCGCATGTTCAGAGATCCATTCACCCTCGACCGCAACAAGCTGGTGCTGTGTGAGTGGGAGTTCCAGGTGGGCCCGTGCGAAGGGATCGACATGGGGGACGAGCTCTGGATGGCGCGCTTCCTGCTGCACCGCGTGTGCGAGGATTTCGGGGTGATCGCCACCCTGGACCCCAAACCTGTCCCAGGCAACTGGAACGGAGCCGGCTGCCACATCAATGGTGAAGACAAGCTAGCGGCCGAACACGATGTGCTGGGGCGAGAAGCAGGTGCACCACTTTTGACGAAACTTCAGCAGAGgCACATAGAGAAGGCCATTGAGAAGCTGGGCCGACGCCACGCACACCACATTCGTTGCTACGACCCCCATGGTGGCCTTGACAATCAGCGACGCCTGACGGGCCACCACGAGACCTCCAGCATCCACAACTTCTCTGTGGGCGTGGCCAACCGTGGGGCCAGCATCCGAATCCCATTCCTGGTAGCCCAGGAGGGCCGGGGCTACTTCGAGGACAGGCGACCTGCGGCCAACTGCGATCCTTATGCTGTCACCTGTGCCATGGTCCGCACCTGCCTGCTGGACGCCccggacgaggaggaggagataGAGAAGAAACAGGTGGAGAAGAAAGACTGAgactggaggaagaggaggagggctTGTGGGGCAGAGGGACAGGAGACGGGGAGGGACAGtggagaggagaaagaggagaagaaagaatAAAGGGAACAGAGACTTTATAATCTGTTGTCTCTTCataatgtgtctctgtgtgcatgtgtgcaacACTTCTCTGTACTTGTTTTTACTGCTTCATGCAGAAGCATCTTGACAACCAGTGCACAAGGAACTGTTGAGAGTCATAGTTGTAATTGACTGGGATGCGCAGAACTCTGGATACGATGCTTTTCCCAGGGCTGCTCTACTTCAGTCCTCTCCCCTCAGTGTGAGAGACAGGAAGGTGGGGCATGTGGAAATGGcttgaatatttaataaaaacaaaacaaacaaaaaaacagataaataataataatgataaaggTCCTTGTCAAAATATTGACAAAGTCATAAAGTCAGTTATGAAGGAGAGGTTTGGGTATCCATTACAGCAGCTGTCCCTCCGGTGTGTGCCCTCCCAGAtccaggggcggactgggaccaacAAACGGCCCTGGAATTTGAC

Function

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020210 True 2932 mRNA 0.45 5 13170986 13180186

Neighbor

gene id symbol gene type direction distance location
AMCG00020205 NA coding downstream 7340 13139172 ~ 13163646 (-)
AMCG00020204 NA coding downstream 60147 13092563 ~ 13110839 (-)
AMCG00020203 NA coding downstream 87034 13083629 ~ 13083952 (-)
AMCG00020199 LOC102778062,LOC101486272,LOC102199534 coding downstream 91451 13075718 ~ 13079535 (-)
AMCG00020202 NA coding downstream 132921 13034089 ~ 13038065 (-)
AMCG00020208 NA coding upstream 19534 13199720 ~ 13204989 (-)
AMCG00020209 nelfb,LOC106579998 coding upstream 49822 13230008 ~ 13235396 (-)
AMCG00020211 LOC107584610 coding upstream 57729 13237915 ~ 13247628 (-)
AMCG00020207 NA coding upstream 75347 13255533 ~ 13273396 (-)
AMCG00020214 NA coding upstream 158367 13338553 ~ 13343605 (-)
G61593 NA non-coding downstream 163320 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 365553 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 427549 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 587238 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 671560 12493801 ~ 12499426 (-)
G61696 NA non-coding upstream 156830 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 266816 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 398223 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 570898 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 609205 13789391 ~ 13792931 (-)
G61589 NA other downstream 172763 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 661049 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1118775 12001700 ~ 12052211 (-)
G61269 NA other downstream 1469341 11695691 ~ 11701645 (-)
G61170 NA other downstream 2414567 10755468 ~ 10756419 (-)
AMCG00020212 NA other upstream 36810 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 415332 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 483890 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 624834 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 631227 13811413 ~ 13813003 (-)

Expression


Co-expression Network