AMCG00020211 (LOC107584610)


Basic Information

Item Value
gene id AMCG00020211
gene name LOC107584610
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13237915 ~ 13247628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020211
ATGGGAGTATTTGAGAAGTGGGTCCTGCTCGTCTCCGCGCTGTGCACCGTCTGCCCGCTGCAGGTCCGGTCCATGTCGAAGGAGGAGAAGTCGAAAATCCGGGACCAGATTGTGGAGATGTTCGATCATGCCTACGGCAGCTACATGaaATACGCTTACCCAGCGGACGAGCTCATGCCGCTGAGCTGCAGGGGGAGGGTGCGTGGGCTGGAGCCAAACCGTGGAGACATTGACGACTCGCTTGGCAAGTTCTCTCTCACCCTCATCGACACCCTGGACACATTAGTGgTTTTGAATAAGCTGGAGGAGTTTGAGGCGGGGGTGCGTCGAGTGGTGCAGGAGGTGCGCCTGGACAATGACGTTGTGGTCTCCGTGTTCGAGACCAACATCCGCGTAGGCCTGCTGGGGGCGCACGTGATGGCAGACATGCTGCGGAAGCGGGCAGAGGGGCACATGGCCTGGTACCGGGACGAGCTGCTGCACATGGCCCGGGAGTTGGGGCACCGCCTGCTGCCCGCTTTCAACACCACCAGCGGCCTGCCGTACCCTCGGGTGAACCTGCGCCACGGGGTCCTCAGCCCGCTGTCCCGCACAGGCACGGAGTCGGACACCTGCACGGCCTGCGCAGGGACCATGATCCTGGAGTTCGCAGCGCTCAGCCGGCTATCAGGGGAGAGCGTGTTCGAGGAACAAGCACGCAGGGCTCTGGATGTGCTGTGGGAGAAGAGACAGAGGGGCAGTGACCTCGTGGGCACCGTCATCAACATCCACAATGGGGACTGGGTCCGCAGGGaCAGTGGAGTGGGAGCAGGCATTGACTCGTACTACGAGTACCTGATGAAGGCCTACATCCTGCTGGGGGATGATGTGTACCTGGAGAGATTCAACACTCACTACGCTGCCATCATGAAGTACATCAGCCAGCCCCCCCTGCTGCTCAGCGTCCACATGCACAACCCCACGGTCAGCGTGCGCAGCTGGATGGACTCTCTGCTCGCCTTTTTCCCCGGATTGCAGgtgcTGAGGGGGGATCTGAAGCCTGCTATAGAGACGCACGAGATGCTGTACCAAGTCACCAAGCAGCACAAGTTCCTGCCGGAGGCCTTCACCACAGAGTTCAGAGTTCACTGGGGCCAGCACCCCCTCAGGCCGGAGTTTGCAGAGAGCACCTACTTCCTGTACAAGAAGCTGAACACTCACGCTCGTGTCCCCTGTGGCTTTGCTGCCGTGCAGGACGTCCGCACCGGCACACATGAGGACAGGATGGACTCGTTCTTCCTGGCCGAGATGTTCAAATACCTGTATCTGCTGTTCTCGGAAAAGAGTGAGCTGCCCATTGACATCGACCACTACGTCTTCACCACTGAGGCCCACCTGCTGCCCGTGTCCTTGTCCACCGCCCTGTCGCCCTGCCGCCACAACCGCACGAATGGCCCCCCTGCTGTGGAGGACGACCTGTTCACCCACTCCTGCCCCAGCGCCCAGACTCTCTTCCCCAACAACCCCTCCTTCGCCAAGACCATCCGTGACAGCTACAAATACCTCACAGGGGCCGGGGCTGCACCGCCCTCTTCCCCGATCAGggGGATCGAGTTGCCCTTGCATGACAATGGCATGGAGCCGATGGAATTCCTGAAGAGCATGGGCATCTCCCTGACCCCACTGAGTGACGGCAGCGTGGGGGTCAGCAGCTCAGGCTCGCCCCTGGTGAGTACAGCACCTCCACCCAGTACCGCCCAGCCTCCACATGAGCCCTCCTCCTCTCAGAATGGGGTGTACCGGGTGAAGCTGATCGCGGAGGTGACcaccgaggaggaggaggaggcagtggTGCCACTTGCTGTGCAGATCATCTCCCCCCCATTCCTGGGCAGGACGGTGTTGACCGCTGGACCCGCCAAGTTTGGGATGGACCTCACCAAGCAGGAGCATGGGGTGAAGGGCAGTGTGGTACGTAGCGTGCCGTTCAGTGCGTGCAGTGTGTTGGAGAACGCGGTGGAGCTGCACGGCCGTGTGGGTGTGGCCCTGCGCGGGGACTGCATGTTCGCGGCCAAGGCTCGCCACCACCgcgagggcagcagcagtgaagaGACACCGCTGTTCCAGATGGTGGGGGACGGCGGGGGGACAGAGGACATCACTGTGCCGCTGCTTTTTCTGTTCAGGCGTGAGGGCGCCATACTGCTGGATGCGCTGGACACTCACCGCAATGTGGACGCGGGGAAGGCAGAGAGGCCGCTTGGAATGAACATCAAGATCCGGCTGGCGGACGAGAGTGATCTGATGGCAGAGGGGCTGCAGGGTGGGCCAGGCAAGAGCACCACCATCGAGCTGCTGCTGGAGACGGACGAGGAGGAGCGGGTGCCAGCACCGCTGGGCCACTGCTCCCCCCCTGAGGAGGCTCCCGCAAAACAGGGGCCCGAGGAGACCCCCTCCCTGCTCAGCAGCTCGGACAGTGACACCCAGAACCCACAGGGGTCACAGCTGGGCGCAAAGCAACAGCAGGTATCAAGTACAGACAGACCAACGGACGTGCCATACCACCAgccttcctcctcttcctcctcacagGTCTCTGACCCTGACCCCTGA

Function

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020211 True 2592 mRNA 0.62 20 13237915 13247628

Neighbor

gene id symbol gene type direction distance location
AMCG00020209 nelfb,LOC106579998 coding downstream 2519 13230008 ~ 13235396 (-)
AMCG00020208 NA coding downstream 32926 13199720 ~ 13204989 (-)
AMCG00020210 NA coding downstream 57729 13170986 ~ 13180186 (-)
AMCG00020205 NA coding downstream 74269 13139172 ~ 13163646 (-)
AMCG00020204 NA coding downstream 127076 13092563 ~ 13110839 (-)
AMCG00020207 NA coding upstream 7905 13255533 ~ 13273396 (-)
AMCG00020214 NA coding upstream 90925 13338553 ~ 13343605 (-)
AMCG00020215 NA coding upstream 96600 13344228 ~ 13351669 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding upstream 121020 13368648 ~ 13387997 (-)
AMCG00020221 NA coding upstream 152486 13400114 ~ 13403240 (-)
G61593 NA non-coding downstream 230249 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 432482 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 494478 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 654167 12578671 ~ 12583748 (-)
G61477 NA non-coding downstream 738489 12493801 ~ 12499426 (-)
G61696 NA non-coding upstream 89388 13337016 ~ 13338101 (-)
G61729 NA non-coding upstream 199374 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 330781 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 503456 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 541763 13789391 ~ 13792931 (-)
AMCG00020212 NA other downstream 13403 13216996 ~ 13224512 (-)
G61589 NA other downstream 239692 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 727978 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1185704 12001700 ~ 12052211 (-)
G61269 NA other downstream 1536270 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 347890 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 416448 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 557392 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 563785 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 577061 13824689 ~ 13834729 (-)

Expression


Co-expression Network