AMCG00020215


Basic Information

Item Value
gene id AMCG00020215
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13344228 ~ 13351669 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020215
ATGGCGGGGGGTCAGCGGAGGTTGGCGGCAGACTCGGGGCGCCCCTCGTCAGCAAGCTCTGGGGGGTCGGGGGCGAgctgggaggtggaggggggcGAGGACCTGGGGGAAGTagaggggggcgggggaggggaCGACGATTTCGATTTCCACAGCCAGATGGATGAGAACGGTATCATCGGGCTGGACGACTTCACAGAAGAGCTCCTGGAGGGCAGGAGAGGGCCCCTCTCAGACACGGGGACCCCCGATCCCGAAGAGGGCCCCCGCCCAGCATTGGCCAGCCCCGGGTTCGAGTTGGAGGAGGACCTGTTCGAGGACCTGAGCTACAACCTCAGTGAGCTGCAGGACTCGGAGCCTCTGCTGCTGTCCCAGTCCCCCGGGCAGGAGGCTGGCCTATCCCCCTCgctctccccttccctctcccttGATGGTCCACACAGGCTGGGAGAAAGCGCAGGGAGTTTTGGGGCAGAGCAGttgggagaggaggaagaggaggaggagggtgagcCCTGGCTTGTCCACAGACCGCAGCAGTGGCGTCCAGATAGAGACGCACAGCTGGATATGACggaggatgagagagagggggaggggtctGCGGGGGAGGACAGccaaagaggaggaggagcctcGAAGTACTGGGAGGAGCCTGTGACGAGGGGTCCAGAAGACTTCGGGGACATATCTGACATTCCAATGGCCAGGTTTCTGACTGGTTTTGGAGAGAAAGATGAAGAGGGAGAGCCAGCGACAGCATACAGagtcacaaaacacaacagtgttGGTGTCTCGGGGGACAGTGAAACAGGGCCTGAGCAGGATGAAGAGGGGCAGACACCGTTCAGCGGAACCCTCCTCTCTCGGGCTCAGCCCCTGCTGCTCCCAGCGCCAAGAACCCTGCACCAGCAGAACCGCCAAATCGGACCTTCCACAACCCACCTTGACCGGAGCTTCCTGTGCCGGCTTTCCAGAGAGGACCTGGATGCCCCGGGACCCGACCTCCAGGCCGAGCCCTTCCCCGATTCTCCTTCCTCTGAGAGCAGCAGCGCCGATGAGTTCGGAGGGAATAGCAgcccctctctcctccaccaCCGCCTCTCCTGGGACAGCGGGCGCCAGgcgagggagggagaagaggaagcAGGTGAAGACTGGCAGGGGGAGCTCGAAGATGAAGTTGGAGATGAAGCCCCTTTCAGGACCGCTTGGACAATGTCTGTGCCCCCACCCTCCGCGCCAAgacagcccccctccccctcggccAGTCCCCCAAAGCATGGACCCCCCAAACGCCATCCTCTGCCTCCATCCCCCTCTGCCTCCCAGTCCAAGACGAGGATTTCAGGGTCGCCCCTCAGAGCCACACAGACAGGAGACACCAGAGGACGCAGGATTCCGAGGGGGGTCTCCCCGAAAGTAACCCCAGGAGGCTCCAGCACCCCTGTCACTGACACCCCCAGGTATGGCCGGGGGCAGCTCAATTACCCCCTGCCCGATTTCTCCAAGGTGGAGCCCAGGGTGCGATTCCCCAAGGATGGGTACCGCCCCCCCCGTGGTAGGGGCTCGCCCCGGTGCAGCACAGGGCTCCCTGTCCCCCCCCTGGTCTTCAAGTCCCCGGCCGAGATCGTCAGGGAGGTCCTGCTGAGCAGCACGGAGGCAGCGCCCCGCCCAGCGCCCTCCGCTGGCCGCCGACCTCCGACCCCCAATGCCACGCTGCCGGAGGAGTTCAAGTCCCCCCAACAGGCCACTGCTCTGGTGCACCAGCTCCAGGAGGACTACAACAGACTGTTGACCAAATATGCAGAAGCTGAGAATACCATCGACCGCCTCAGACTGGGAGCCAAGGTCATGACCCTGTCGTTCCCCCAGGCCCAGAAAGCGCAGATCGGCCCGTCCGCTGACTCCGCTCCCCAGGCTCGGCACGGCACAGAACTCTCTCCTGACGTCCCCCCGGCGGCAGCGGCGGCCTCCACCCCCAGCCCCAGCATGGGCCCTCAAGTAGGAGAGAGGCTGACCAAGGCTCTCGCCCGGCAGGCTGAGCGGTTCCGGCTTCAGattgAGTCCTTTGAAGACCTGCTCAGGTCAGGAAGGCTGAAGCCCACTGAGCAGATGAAGGGCCTGTCCAGCCTGCAGCAGACCCAGGAGGCTCTGGAGCGGGGCTACCTGCAGGCCAGGGAGGAACAGCGCCACCTGGTGCAGCAGGGTGGTGATGTGGGACACTTTGACCCTGACAGggaggtAGAGGGTCAGATATTCCAGCTGGGGATGCGTCTGGAAGACCTGAAGGAACAGGTGGACCAGGTCGTGCGGTATCCACTCACCTCCGGCCCCCCCGTGGCCCCACCATCATCCCCTCCCGCCCCAGACCCCCTCACCGGGCCCCTCAGCACTAGTGCCCCCACGCCCCACCCCGAGaGCCCAGTGTCCCCGGTGGGAGGGCGTGACGTTGGCGTGTCTTTGGAGGTCAGCTCAGTGAGCGGGGAGAGTgatggggaggagggggcagaGACCCTGCCATCTGCCCTACCCCCCCCACTGCGACACAAACACCAGCGCGTGGAGGGAGAGTACAGCAACCTGCTGGACCATTACCAGAGCTTCAGGGAGCTGCCTGGGCTTTTGAACCTGCACCAGGGAGAAGGGCTTACAGAATCTGGACATGGAGTTTCAAGGACAGCTGGGATACCAGGAGAAgggagcaggaggagagagagaggggaggagaggaggaggaagactgAGGGGGAAGAGGAGAGCACTGCAGCTCTGGAGTga

Function

GO: NA

KEGG:

id description
K21404 AKNA; AT-hook-containing transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020215 True 2781 mRNA 0.64 11 13344228 13351669

Neighbor

gene id symbol gene type direction distance location
AMCG00020214 NA coding downstream 623 13338553 ~ 13343605 (-)
AMCG00020207 NA coding downstream 70832 13255533 ~ 13273396 (-)
AMCG00020211 LOC107584610 coding downstream 96600 13237915 ~ 13247628 (-)
AMCG00020209 nelfb,LOC106579998 coding downstream 108832 13230008 ~ 13235396 (-)
AMCG00020208 NA coding downstream 139239 13199720 ~ 13204989 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding upstream 16979 13368648 ~ 13387997 (-)
AMCG00020221 NA coding upstream 48445 13400114 ~ 13403240 (-)
AMCG00020219 NA coding upstream 57036 13408705 ~ 13427411 (-)
AMCG00020220 NA coding upstream 118141 13469810 ~ 13470856 (-)
AMCG00020224 NA coding upstream 234711 13586380 ~ 13588928 (-)
G61696 NA non-coding downstream 6127 13337016 ~ 13338101 (-)
G61593 NA non-coding downstream 336562 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 538795 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 600791 12719367 ~ 12743437 (-)
G61488 NA non-coding downstream 760480 12578671 ~ 12583748 (-)
G61729 NA non-coding upstream 95333 13447002 ~ 13450062 (-)
G61803 NA non-coding upstream 226740 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 399415 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 437722 13789391 ~ 13792931 (-)
G61927 NA non-coding upstream 470079 13821748 ~ 13823540 (-)
AMCG00020212 NA other downstream 119716 13216996 ~ 13224512 (-)
G61589 NA other downstream 346005 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 834291 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1292017 12001700 ~ 12052211 (-)
G61269 NA other downstream 1642583 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 243849 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 312407 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 453351 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 459744 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 473020 13824689 ~ 13834729 (-)

Expression


Co-expression Network