AMCG00020220


Basic Information

Item Value
gene id AMCG00020220
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13469810 ~ 13470856 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020220
ATGATCAAGGTGCTGCTGCCAGCACCACGCCTGCAGCTCATGCTCCTACCtctgctccttgtgctcctgcTGCTGGTCTGGTACAACCCGCTGCTGCTGCCCCAGGGCAGAGGAGCCCCCCCCATCCACAACATCACTGTTCTGGTCTGGAACTGGCCATTTGGCCATGCCTTCCCCCTGCACAGTGACATGTGTGAAACAAATGACGGCCTCCCCACCTGCCATCTCACTGACAACCGCTCCCTCTATGAGCAGGCAGACGCGGTCCTCTTCCACCACCGAGAGATCAACAGTCGGGCCGTGGCTCTGCCTACTGACCATCCCCGGCCTCCTGGGCAGAAGTGGGTCTGGATGTCAATGGAGTCACCGACCCATAACTACAACCTGACCTGGCTCAACGGCCTCTTCAACTGGACCCTGACCTACCAGCGGAATGCAGACATCTATGTTCCCTATGGGAAGCGGGTGCCCAGGAGGGGGAAGAGCAGCAGCAATTACACCATCCCCCGGAAGCGCTCAGACAAGCTGGCCTGCTGGGTGGTGAGCAACTACAAGGAGAGACACAGGAGGAGCAAGGTTGCCAGGGAGCTAAGCAAGCTGATTCCCCTGGATATATACGGGCGCTCTGTGCACAAGCCGCTGAAGTCCGACCAGCTACTGAGCACCATCTCACAGTATCGTTTCTACCTGGCTTTCGAGAACTCGGAGCATCGCGACTACATCACTGAGAAGCTGTGGCGCAACTCCTACGAGGCAGGTGCAGTGCCTGTGGTGCTGGGTGCCCCCCGCTCCGACTATGAGGCCTTGGCCCCCCCCGACTCCTTCATCCACGTGGACGACTTCCCTTCTGTCCGGGAGCTTGCTGAATTCCTGCGCACTGTGGCCACCAACGAGACACGATACCAGCAGTACTTCCAGTGGCACCGCGAGTGGGAGGTACAGGAGTACAGGGGCTGGTTAAATAGGATCTGTCTTGCTTGCATCCAGTACCACACTGTGTCCCCCAGGAAGGTGTACCATGATCTGCAGGGCTGGTCTGTCAGGTGA

Function

GO: NA

KEGG:

id description
K07635 FUT7; galactoside alpha-1,3-fucosyltransferase 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020220 True 1047 mRNA 0.59 1 13469810 13470856

Neighbor

gene id symbol gene type direction distance location
AMCG00020219 NA coding downstream 42399 13408705 ~ 13427411 (-)
AMCG00020221 NA coding downstream 66570 13400114 ~ 13403240 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding downstream 81813 13368648 ~ 13387997 (-)
AMCG00020215 NA coding downstream 118141 13344228 ~ 13351669 (-)
AMCG00020214 NA coding downstream 126205 13338553 ~ 13343605 (-)
AMCG00020224 NA coding upstream 115524 13586380 ~ 13588928 (-)
AMCG00020231 NA coding upstream 179733 13650589 ~ 13663220 (-)
AMCG00020237 NA coding upstream 201439 13672295 ~ 13684406 (-)
AMCG00020236 NA coding upstream 220071 13690927 ~ 13702190 (-)
AMCG00020235 NA coding upstream 237960 13708816 ~ 13710669 (-)
G61729 NA non-coding downstream 19748 13447002 ~ 13450062 (-)
G61696 NA non-coding downstream 131709 13337016 ~ 13338101 (-)
G61593 NA non-coding downstream 462144 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 664377 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 726373 12719367 ~ 12743437 (-)
G61803 NA non-coding upstream 107553 13578409 ~ 13653379 (-)
G61872 NA non-coding upstream 280228 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 318535 13789391 ~ 13792931 (-)
G61927 NA non-coding upstream 350892 13821748 ~ 13823540 (-)
G61943 NA non-coding upstream 442316 13913172 ~ 13914166 (-)
AMCG00020212 NA other downstream 245298 13216996 ~ 13224512 (-)
G61589 NA other downstream 471587 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 959873 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1417599 12001700 ~ 12052211 (-)
G61269 NA other downstream 1768165 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 124662 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 193220 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 334164 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 340557 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 353833 13824689 ~ 13834729 (-)

Expression


Co-expression Network