AMCG00020222 (clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903)


Basic Information

Item Value
gene id AMCG00020222
gene name clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13583281 ~ 13585950 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020222
CTGCACCTGACACGCAGGACCCGCATAGAGACACAGGTaaacacggacacacacaggTTAGATCAGATACACACACTTAAAACAGATACGCACTTCatccacacacactgagcactgaCCAGTAAGGACAGGGAGATGCCCAAAACAGGTGAACCAAACTAAGCAAACTACAACTGGTAACTGCTGAGGTTCGCCCACAGAGGACTGGCCTGtggagtgagacagagaggaggaggaggagaaggaaacCAACTCACAAGCCTGCCTGGGGGAGGAATGGCCGAAGCTCTGAAAATCGAGCTCTTCATCAAGGCCAGTGATGATGGAGAGAGCGTGGGAAACTGTCCGTTCTGCCAGCGCCTCTTCATGATCCTCTGGCTGAAGACTGTCAACTTCACCCTGACCACTGTGGACATGAAGCGGGCCCCAGAGGTGCTGAAGGACCTAGCCCCGGGCTCCCAGCCGCCCTTCCTGCTGTACAACGAGGAGGTGCGCACAGACACCAATAAGATTGAGGAGTTCCTGGAGGAGCAGCTGGCACATCCACAgTACCCCAAGCTCAGCTGTCGCTACAAGCAGTCCAACCGGGCCGGGGACGACATCTTCCACAAGTTCTCTGCCTACATCAAGAACCCCAACCCTGGACTGAACAACATGCTGGAGCGCAAGTTCCTGCGCAGCCTGATGCTGCTCGACCAGTACCTGCTGGCCCCGCTACCCCACGAACTGGACAAGAACCCCTCACAGACTGTGTCGCAGCGCCGGTACCTGGATGGCGACGAGCTCTCCCTCGCAGACTGCAACCTACTGCCCAAACTGCACATCGTCAAGgtggtGTGCAGGAAGTACCGAGACTTTGAGATGCCAGCAGCTCTGAAGGGTCTGACCCGTTATCTTGATAACGCCTACCAGCGTGATGAGTTCCGCTACACCTGCCCTAAGGACAGCGAGATCCTGCTGGCCTACCACTCTGTCGCCAAGTACCTGAAcaaatagagagagggagaagggaggggaaaaagaaagggagggagagagaaaagaaggaTTAAGAGGATAAaatagagagggagagcaagGTGAAttgagggatggagagagggagatgggggggtTAAGGAAGAGGGTGGTAGAGTGGAGAGAATGGAAGAGAAGGCTGGAGGGAGAAGAGAAGCCAGTAATTAAGTATTGCTGTTTCAAGTGTGTCCCAGCTTGCTTCCCATACACCctgtactgctgctgctgcattcTTATACTCAACTGAACCACTAATCTCTAACTGACTTgttaattgattcattgatGTGGGTATCGTTGCTGGTTCACACATTTGCTTTGTGAGgagttgggggg

Function

symbol description
clic4 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport; glutathione metabolic process; and regulation of ion transmembrane transport. Predicted to be located in cytoplasm. Predicted to be part of chloride channel complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; immature eye; mesoderm; and pericardial region. Orthologous to human CLIC4 (chloride intracellular channel 4).

NR:

description
chloride intracellular channel protein 4

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05023 CLIC3; chloride intracellular channel protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020222 True 1353 mRNA 0.54 6 13583281 13585950

Neighbor

gene id symbol gene type direction distance location
AMCG00020223 abca2 coding upstream 4106 13545411 ~ 13579175 (+)
AMCG00020225 NA coding upstream 66514 13513554 ~ 13516767 (+)
AMCG00020217 pou5f3 coding upstream 121800 13456679 ~ 13461481 (+)
AMCG00020218 NA coding upstream 131490 13436742 ~ 13451791 (+)
AMCG00020213 LOC102780640 coding upstream 253104 13303410 ~ 13330177 (+)
AMCG00020226 NA coding downstream 6146 13592096 ~ 13595451 (+)
AMCG00020228 NA coding downstream 12019 13597969 ~ 13613378 (+)
AMCG00020227 NA coding downstream 39913 13625863 ~ 13639928 (+)
AMCG00020232 NA coding downstream 146690 13732640 ~ 13736452 (+)
AMCG00020247 NA coding downstream 168985 13754935 ~ 13759675 (+)
G61676 NA non-coding upstream 231747 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 234135 13348855 ~ 13349146 (+)
G61672 NA non-coding upstream 239242 13343757 ~ 13344039 (+)
G61671 NA non-coding upstream 239900 13343143 ~ 13343381 (+)
G61670 NA non-coding upstream 240268 13342680 ~ 13343013 (+)
G61774 NA non-coding downstream 9564 13595514 ~ 13596726 (+)
G61841 NA non-coding downstream 122885 13708835 ~ 13709496 (+)
G61871 LOC100846954 non-coding downstream 165137 13751087 ~ 13751363 (+)
G61904 NA non-coding downstream 291361 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 302201 13888151 ~ 13890428 (+)
G61675 NA other upstream 232569 13349677 ~ 13350712 (+)
G61491 NA other upstream 963464 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1041020 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1168330 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2283249 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 201064 13787014 ~ 13792944 (+)
G61894 NA other downstream 247220 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 277527 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 296875 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 362476 13948426 ~ 13951047 (+)

Expression


Co-expression Network