AMCG00020223 (abca2)


Basic Information

Item Value
gene id AMCG00020223
gene name abca2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13545411 ~ 13579175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020223
ATGGGGTTTCTCCATCAGCTGCATCTCCTGCTGTGGAAGAATGTGTCTCTGAAGCGGAGAGGACCGTGGGTGCTGGCCTTCGAGATCTTTATCCCCCTGGTCCTGTTCTTCATCCTTTTGGGACTAAGGCAGAAGAAACCCACTATCCCTGTGAaggaagcaTTTTACTCCGCAGCCCCGTTGACGTCAGCTGGGATAATTCCCATCATGCAGTCTCTGTGTCCGGATGGCCAGAGGGATGAGTTTGGGTTTCTGCAGTACAAGAACTCCACACAGGCTTCAACACCAGCCGAGCGGAATCTCTCCCTGTCCAACGACACGGCCGGCCTGCTGCTCTCTTCCCCCATCAACCTCAGAGAGgtgTATAACCTGATCTTCGGCTCGTACCCTGGCAGTGGGGGGGTGGACAGGGGGACCTGGGAGGGCTACAGCCCCGGAGAGAAAGTTCAGCAATTTCAGGAGCAGCTGCTAGGGGGCTGGCGCAGTCTGGAGGGGGGGCTGCTGCACAGGGCTCTGAAGGACCCCGCCGGGGGGCCCCATCGGCAGGCCCTGCTGAGGCTGCTCTCCCAGGCATTGGGGGTGGCGGTGCTGGGGGGGGGTGCCGCGACCTACGACCTGCAAGGCTTCCGCGAGATACAGAACATTCTGCTGACCGGGGGCATGCTGGAGCTGCTAACCTGTGGGGAGGGTGGGGACAGTGAGCTGCGCAAGATCCTTTTGGTCCCTGACAGACAACAGACACTGCTGCAGGCCTATCGCAGCGCAGTGTGTGGCGGGGGAGCAGGGCAGAGGGCCCAGCGCTTCGGGGAGATGAGCCAGGAGCTAAAAGAGCAGATCAACACTCAGACTGTGATTGATAAgCTGAACAGCTCAGGTGGGGAGTCTCACCTGGGTGCCCTGCTGCAAGATCTGGCGGAGGTGGAGCGTATCCTGAGAGACGTGGACCTGCTTTCAGCCCTGGCCAAGCTGCTGCCCAAGGGAGCCTGCTCTGGCCGTCAGCCCTCCGCCCCCACCAATGGAACTAGTGCATGGGGGGCCAATGCCACCACCTCCATGCCATGGTCCAATGCCACAGAGAGCCCCGGAGAGGAGGCCAGTGGGGGCGGAGAGAAGGCAGGGGCAGGGGCCAGCGAGAACCCCCACTCCCAGTTCTCGGCCTTCGAGCAGCGCAACCTGGGGCTGCTGGTGCACCTCATGACTACCAATCCCAAGATCCTCTACTCCCCTGTGGGGTCACAGGTTGACAAGGCCAACGAGACATTTGCGTTTGTGGGCAACGTGACGCACTACGCCCGTGTGTGGCTCAACACCTCCGCTGCGTTACGCACCTTCCTGGAGGAGGGGCAGCTGCACAGCCGCATGGCCTGGCTGCAGCAGTTCACCTCTGACCTCCGCAGGCACCCCGAGCTGCTGCAGGCGTCGGACAGCGAGTTTGTGCGCAGCCTGGTGGCCGGGAACTTCACACTGCCCGACGCGCAGACCCTGTTGGAGCAGCTGGATACCATCGACAATGCGGCCTGTGGCTGGACCAGCTTCATGTCCAAGAACTCCAGCTTCACAGAGAAGACCAACGAGATCCGCCGGGCCTACTGGCGACCCGGGCCCAACACTGGCGGTCACTTCTACTTCCTTTATGGCTTCGTCTGGATCCAGGACATGATGGAGCGTGCCATCATCAACACCTTCGCGGGACACGACGTCCTGGAGCCGGGAAACTACGTCCAGATGTTCCCCTACCCCTGCTACACCCGCGATGAtTTCCTGTTTGTGATCGAGCACATGATGCCTCTCTGTATGGTGATCTCGTGGGTCTACTCTGTGGCCATGATGATCCAGCACATTGTGGCTGAGAAGGAGCATCGTCTCAAAGAGgtgATGAAGATGATGGGGTTGAACAATGCTGTCCACTGGGTGGCCTGGTTCATCACAGGCTTTGTCCAGCTGTCCATCTCAGTTACCGCGCTGACTGCCATCCTGAATTTCCTGGTTTCGGTGATGTACTCGAAGGCGAAGGTGGCGTCTGCGTGCGGTGGGATCATCTACTTCCTGAGTTACGTACCCTACATGTACGTGGCAATCAGGGAGGAGGTCGCCCACGACAAGATCACGGCCTTCGAGAAGTGCATTGCGtCGCTGATGTCCACCACAGCGTTTGGTCTGGGCTCCAAGTACTTCGCACTATACGAGGTTGCCGGGGTGGGCATCCAATGGCGCACTATCAACCAGTCACCAGTAGAGGGTGATGACTTCAACCTGCTGCTCTCCATGCTGATGCTGTCCATTGACGCATGTGTGTACGGAGTGCTCACGTGGTACATCGAGGCTGTGCACCcagggaTGTATGGGCTGCCCCGGCCCTGGTATTTCCCACTGCAGCGATCCTATTGGCTGGGCAGCGGGCGGACGGAGGCATGGGAGTGGCCCTGGGGGGGCGGGGCTAGGCTCAGTCTGTTCCCACCCACCTCGGGCTCCGCCACAATCTACGGCCACGACATCCGCACCGAGATGGACCAGATCCGGCAAAACCTGGGCATGTGCCCGCAGCACAACGTGCTGTTCGACCGGCTCAGCGTGGAGGAGCACCTGTGGCTCTACTCACGGCTCAAGGGTATGGCCGAGGACGACATCCGCAAGGAGATGGACAAgaTGATAGAGGACCTTGAGCTGTCAAACAAGCGCCACTCCCTGGTGCAGACGCTGTCGGGGGGGATGAAGAGGAAGCTGTCAGTGGCCATTGCCTTCGTGGGGGGATCGCGCGCCGTCATCCTGGACGAGCCCACGGCCGGGGTCGATCCCTACGCACGCAGAGCCATTTGGGACCTCATTCTCAAGTACAAACAGGgACGCACCATCCTGCTGTCCACTCACCACATGGATGAGGCCGATCTCCTTGGTGACCGCATCGCCATCCTGTCTCACGGCAAGCTGAAGTGCTGCGGCTCCCCGCTGTTCCTCAAGAGCACCTACGGGGATGGCTACAAACTGACCCTGGTCAAGAAACAGAGCGACAGCCAGCGCACCGAGACGCGTGTCACACAGTTCATACGGCAGTTTGTGGCATCCTGTCTGCTGGTGTCCAACTCTAACACAGAGTTATCCTACGCCCTGGAGCAGAGTCTGGACAACCTGGCTCTGAGCAGCTTCGGGCTGATGGACACCACCCTGGAGGAGGTTTTCCTCAAGGTGTCTGAGGAGGACCAGTCACTGGAGAACAGCGACGTTGggaTGGTCTCTCTTTCAGACATGAAGGACTCGGCAGGCGACCTGGGGAAGTCAGAAGGCATTGCAGGGGGGGGGTCTCCAGCATGCGATGGGCCACCGGCTGGGGGCAGCGGCAGGGGGAGGCCGGAGGTGGAGCTCAGTAACCTGGTGATGTCATCGGGGCTGAGCCACAGCCAGGGCTCATTGCGGTCAGCCTCCTCACTGGGCTCGCTGCGCGGGGATGAGGGGGGGCTCTATGCCGACTTCTATGGAGACTACAGCCCCCTGTTCAACACCGCTGAGGACATGGACACGGCCAGCATGCAGGCAGACCAGGACCCTGAGCAGGAGCCACGGGAGCAGCAGTCCCCCCTACTGGAGGGCCAGGGAAGCTACAAGCTGGAGGGCTGGTGGCTGCGGCTGCGCCAATTTCATGGGCTTCTGGTCAAGCGCTTCCACTGCGCCAAGAGGAACACCAAGGGGCTGTTCTCCCAGATCCTGCTACCTGCCTTCTTCGTCTGCGTGGCCATGACCGTCGCCCTGTCCGTGCCTGAGATtgGTGACCTGCCCCCCCTGATCCTGTCGCCCTCCCAGTACCACAACTACACCCAGCCCAGGGGTAACTTCATCCCTTACGCCAACGAAGACCGCGCAGAGTACAGgagtaAGCTGTCCCCGGACGCCAGCCCCCAGCAGATCGCCAACACGCTGCGGCTGCCCTCGGGGGTGGGGGCCACCTGCGTGCTCAAGACCCCCTTCAACAGCACCCTGGACCAGCTGGCTCAGACACTCAACCCCAGCGCCAACAACTCCAAGACGCTGGCGGCACGCTACTTTGACTCCGTGTGTCTGGACTCCTTCACCCAGGGCGTGCCCCTGTCCAACTTCGTGCCACCCCCGCCCTCCCCTGCCCCTTCCGATGACCCCGACGCCGACCCCTTCGAGGACGGGGCCTGGAACTTTACCGCCCCGCCTCCCCCCACCACTGTCCacgaggCGGTGAcgtcccccccctctctcccacgCACCATCCACGAGCCCATTAGGTGTACCTGCTCCATGCAGGGCACTGGCTTCTCCTGCCCCAGTGGCGTGGGAGGGCGTCCCCCCCTCATGAAAGTGGTCACGGGAGACATCCTGGTCGACATCACAGGGCGCAACGTCTCAGAGTACCTGCTGTACACCTCGGACCGCCTACGCCTGCATAGGTACGGCGCGCTCACCTTTGGTAACATCCAGAAGTCAATCCCAGCATCCTTTGGGAGGAAGACCCCGCCAATGGTTCGCAAGATTGCTGTGCGCAGATCAGCGCAGGTGTTCTACAACAACAAGGGCTACCACAGCATGCCCACCTACCTGAATGCCCTGAACAATGCCATCCTGAGAGCCAACCTGCCCAAGAGCAAAGGCAACCCTGCAGCCTACGGTATCACAGTTACCAACCACCCTATGAACCGAACCAGTGCCAGCTTGTCTCTGGACTACCTGCTGCAGGGCACTGATGTGGTGATAGCCATCTTCATCATTGTGGCGATGTCCTTCGTGCCGGCCAGCTTCGTGGTCTTTTTGGTGGCCGAGAAGTCCACAAAGGCCAAGCACCTGCAGTTTGTCAGCAGCTGCGACCCGGTCATCTACTGGCTGGCCAACTACATCTGGGACatgttgaATTATCTGGTCCCGGCCACATGCTGTGTGTTGATCCTGTTTGTCTTCGACCTGCCGGCCTACACCTCCCCCACCAACTTCCCAGCAGTCCTCTCTCTGTTCCTGCTGTACGGctGGTCTATCACTCCGATCATGTACCCGGCATCGTTCTGGTTCGAGGTCCCCAGCACCGCCTACGTCTTCCTCATAGTCATAAACCTCTTCATTGGCATCACCGCCACCGTGGCCACCTTCCTGCTGCAGCTGTTCGAGCACGACAAGgatCTGAAGGCAGTGAACGGGTACCTTAAGTCCTGTTTCCTGATCTTTCCCAACTATAACTTGGGCCACGGGCTGATGGAGATGGCCTACAACGAGTACATCAACGAGTACTACGCCAAGATTGgtcagtTTGATAAGGTGAAGTCCCCGTTCGAGTGGGACATCGTGACGCGGGGGCTGGTGGCCATGACAATTGAGGGCTTTGTTGGCTTCTTCATCACCATCATGTGCCAGTACAACTTTCTGCGCAAACCACGGCGTGTGGCGGTGAGCAGTAAGCCCGTGGAGCAGGATGATGTTGACGTAGCGTGCGAGCGGAGGCGTGTGCTGAGAGGGGATGCCGACAATGACATGCTCAAGATAGAGAACCTCACCAAGGTGTACCATTCCCGGCGAGTGGGCCGCATCGTGGCAGTGGACCGGCTTTGCTTGGGCGTGCGGCCCGGCGAGTGCTTCGGCCTGCTGGGGGTGAATGGTGCGGGCAAGAGCTCCACCTTCAAAATGCTGACAGGCGACGAGAGCACAACAGGGGGGGAGGCCTTCATCAGGGGGCGCAGTATCCTGCGGGAGCTGCTGCGCGTGCAGCACAGCATGGGGTACTGCCCACAGTTCGACGCCCTGTTCGAGGACCTGACCGCCCGCGAGCACCTGGAGCTGAATCCCgtggtgcagtgggccctggagAAGTTGGAGCTGACCAAGTACGCTGACCGGCCGGCCGGGACGTACAGTGGCGGGAACAAGCGCAAGCTGTCCACCGCCATCGCCCTCATAGGATACCCCTCCCTCATCTTCCTGGACGAGCCCACGACCGGCATGGACCCCAAGGCACGGCGTTTCCTGTGGAACCTTATCCTCGACATCATCAAGACGGGACGCTCCGTCGTGCTGACATCACACAGtatGGAGGAGTGCGAGGCGCTGTGTACCAGGCTGGGCATCATGGTGAACGGCAGGTTCAAATGCCTGGGCAGCATCCAGCACCTGAAGAACagGTTCGGCGATGGCTATATGATCACGGTGCGCACACGCAGCAGCTCCAGTGTGAAGGAAGTGGTGCGATTCTTCAACAGGAACTTCCCAGAGGCCATCCTCAAGGAGTGTCACCATACCAAGGTGCAGTTCCAGCTCAAGTGTGCCAGTGTGTCGCTGGCGCAGGTGTTCAGTAAGATGGAGCAAGTGGTGGAGGTGCTGGGCATTGAGGACTACTCGGTCAGCCAGACTACCCTGGACAATGTGTTCGTGAACTTCGCCAAAAAACAGAGTGACAACTTAGACCAGCAGGAGAGCTCACCCCCCGGTGGCTCCCAGTCGCCACTGCAGCGCGTATTCAACCTGCTCCGCCCCCGCCCCGCCCACACCGAGCTCAGCGCACTGGTCACTGAGGAGACGGAGGAGCTGGAGAGCGATGACGAGGGCCTGATCAGCTTTGAGGAAGAGAGGgCCCAGCTGTCattcaacacagacacactgtgttgaatggagagaaagagagtagagggggaagaggagagagagagggatagaagAAGAGAAgcagaaagtgtgtgtgtctgtgagactGCGTTTACGATAATGTGTGTGCgacagtgtgtgtatgaatgtgtttggTGGGTCAGGTGATGTTTGTGGAGTGGAATGCTCTCTGATCTAGGACCCCGGAGCCCAAGTCTGTGACATCACTGCAGACTAACAGTGACGGGCAGACTGAcactctgctctctctctccctctctctctgactctctctgacttttaactgtaaatgattgtgtttcaccaaaagggaaaatgtaaatgtaaatcactgaatgaaaattaaaatgatacattgtttaatataaaggaACAAAGAATGTAGGGGACGGGGGGGGGACATTTTAACGGCATCTTGGATTTCTATTTTCATTGTAAAAGGTataaatttgtaaaaaaataataataaaatacaaacaaacaaaaaaataaacaatttagcTGTACATAATGGGAAACATCAGAGCAGCCATGTCTGCCTGGGACTGAGTGACCTATTACCCTTGACCCCCCTCCCttacagggaaaaaataaatcagcatgACCTTGTACCTTTAACCCGTGAcactcacattttctttttggattGCCGCGAACTTTAAACTTTCACCTGTGCATTGGAGGCGgcgagggaggggga

Function

symbol description
abca2 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ABCA2 (ATP binding cassette subfamily A member 2).

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 2 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K05642 ABCA2; ATP-binding cassette, subfamily A (ABC1), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020223 True 7303 mRNA 0.59 48 13545411 13579175

Neighbor

gene id symbol gene type direction distance location
AMCG00020225 NA coding upstream 28644 13513554 ~ 13516767 (+)
AMCG00020217 pou5f3 coding upstream 83930 13456679 ~ 13461481 (+)
AMCG00020218 NA coding upstream 93620 13436742 ~ 13451791 (+)
AMCG00020213 LOC102780640 coding upstream 215234 13303410 ~ 13330177 (+)
AMCG00020206 NA coding upstream 290120 13248757 ~ 13255291 (+)
AMCG00020222 clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903 coding downstream 4106 13583281 ~ 13585950 (+)
AMCG00020226 NA coding downstream 12921 13592096 ~ 13595451 (+)
AMCG00020228 NA coding downstream 18794 13597969 ~ 13613378 (+)
AMCG00020227 NA coding downstream 46688 13625863 ~ 13639928 (+)
AMCG00020232 NA coding downstream 153465 13732640 ~ 13736452 (+)
G61676 NA non-coding upstream 193877 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 196265 13348855 ~ 13349146 (+)
G61672 NA non-coding upstream 201372 13343757 ~ 13344039 (+)
G61671 NA non-coding upstream 202030 13343143 ~ 13343381 (+)
G61670 NA non-coding upstream 202398 13342680 ~ 13343013 (+)
G61774 NA non-coding downstream 16339 13595514 ~ 13596726 (+)
G61841 NA non-coding downstream 129660 13708835 ~ 13709496 (+)
G61871 LOC100846954 non-coding downstream 171912 13751087 ~ 13751363 (+)
G61904 NA non-coding downstream 298136 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 308976 13888151 ~ 13890428 (+)
G61675 NA other upstream 194699 13349677 ~ 13350712 (+)
G61491 NA other upstream 925594 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1003150 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1130460 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2245379 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 207839 13787014 ~ 13792944 (+)
G61894 NA other downstream 253995 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 284302 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 303650 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 369251 13948426 ~ 13951047 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02830985_02865184 ABCA2 coding CI01000339 null 2830926 ~ 2865184 (-)