AMCG00020224


Basic Information

Item Value
gene id AMCG00020224
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13586380 ~ 13588928 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020224
GTTTACGTAGAGGCTGCGCTGGACTCTTGCATCTGTTATtatccttttatttatattgttattactgCAAATGGACAGTGGTAAGGGTGCAGCTCAATGTAAGCCTCTCTACTGCACGATCGTAAATAAAAGCGACAGCTCCAGATACCTGTGCTACAGTACTACCCAGGACGGTGTGTTCAATATCGGccTGACGAATGTAACAGATGTGTGGAGCACAACGTTCACCTTGGACTCACTGACGCAGCACAGGCAGAGCTGTGCTGTGAACTCCACTGAGGAGTACGTCAACAGGATAAGgtCAGCCTGTGAGTGTGGCTCAGTGTTGGTGTCAGTTCAGGATGGCGGGGTCACCCTGGAGCTTGACTCCCCGGAGCCTGGGGTTATGACTTTTGTCCTATCCAGGCTGTCTGACCATGAAGCTCAAGAGGAGCTCAGAGTAGTGCTGTTAGGGATggcagagagactgagggacctagAGAGCACAGCAGGGGGTGCCACCTCCTTCAGTCCAGCCAAGAACCAACAGAGACGCACAGactttGAGCCTAGGAGGCAGCAGAATGGAGGGAGTGGGTCTTTAAAAGCTGCAAAGAAGCGTCTCCCCGGAGAATCACTCATCAACCCGGGAACTAGAAGGAAGAAGGAGGCCAGGGGTGTGGCTTTCGAGGACGAGGAGAGCTGACCAGCACAGAGAAGCTGCtaacacacactcgcacacaaacacacaggagtgtttaatgctgttttacatgtttgtatTGATGTGAAATTCTGCTGGAGCTCAGGCCTCCCCAAGCAAACTAACTTCTTCACGGACTGAGAATGTCATGTAAGACCTGAGGAACAGTGAGCGCCCTCTTATTACTAATGTCATTACTGTTGTAATTTTAATCTATACAGAACTGACCCATATGAACTTTTAGGTAAGGGAGAGAGGAAACCAGGGAGATTTTGAAAACTCCTATCTTAAAACTTTCTTCTCCTTgtcttctctttcctttctctttctt

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020224 True 1013 mRNA 0.48 7 13586380 13588928

Neighbor

gene id symbol gene type direction distance location
AMCG00020220 NA coding downstream 115524 13469810 ~ 13470856 (-)
AMCG00020219 NA coding downstream 158969 13408705 ~ 13427411 (-)
AMCG00020221 NA coding downstream 183140 13400114 ~ 13403240 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding downstream 198383 13368648 ~ 13387997 (-)
AMCG00020215 NA coding downstream 234711 13344228 ~ 13351669 (-)
AMCG00020231 NA coding upstream 61661 13650589 ~ 13663220 (-)
AMCG00020237 NA coding upstream 83367 13672295 ~ 13684406 (-)
AMCG00020236 NA coding upstream 101999 13690927 ~ 13702190 (-)
AMCG00020235 NA coding upstream 119888 13708816 ~ 13710669 (-)
AMCG00020240 NA coding upstream 122854 13711782 ~ 13715191 (-)
G61729 NA non-coding downstream 136318 13447002 ~ 13450062 (-)
G61696 NA non-coding downstream 248279 13337016 ~ 13338101 (-)
G61593 NA non-coding downstream 578714 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 780947 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 842943 12719367 ~ 12743437 (-)
G61872 NA non-coding upstream 162156 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 200463 13789391 ~ 13792931 (-)
G61927 NA non-coding upstream 232820 13821748 ~ 13823540 (-)
G61943 NA non-coding upstream 324244 13913172 ~ 13914166 (-)
G62066 NA non-coding upstream 756369 14345297 ~ 14401302 (-)
AMCG00020212 NA other downstream 361868 13216996 ~ 13224512 (-)
G61589 NA other downstream 588157 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 1076443 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1534169 12001700 ~ 12052211 (-)
G61269 NA other downstream 1884735 11695691 ~ 11701645 (-)
AMCG00020230 NA other upstream 6590 13595518 ~ 13596917 (-)
AMCG00020229 NA other upstream 75148 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 216092 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 222485 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 235761 13824689 ~ 13834729 (-)

Expression


Co-expression Network