AMCG00020228


Basic Information

Item Value
gene id AMCG00020228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13597969 ~ 13613378 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020228
GTAGGAATGGCAGATGAGGAGAACTGCTCCATGTACCAGgtgGGGCTGCTGGCCGGCAGTGACATTAGGGCCCGGGTGCAGCAGTTTGTGGAGGAGAGAATGCAGACCACCATGCTGACCGGTGTGCTGATCGGTGCGGCAGTGGCTATCTCCCTGATCGGGGTCGTGGTTCTGTTCCTCTACAGGAGATACACACAGTCCCGGGAGTCTCAGGCAGCGGGGCCTCGCTATCGCTTCAGGAAGAGGGACAAGGTGATGTTCTATGGCCGCAAGATCATGAGGAAGGTGCAGACCCTGTCCGCCCCCCCCAGTTCGGGCAGCAGTGTGTCCCGCCAGCGCTCACGGAAGAGGCCCAAAGTCTTGAACCTGGCCCGCAGGATCCTGCGTATCCGCCGGGACCCCCCCACGCTGCAGCCCAAGGAGCCCCCCCCCTCTCTGCTGGAGGCAGACCTAACAGAGTTTGACGTGCAGAACTCACACCTGCCCTCGGAGGTGCTGTACATGCTGAAGAACGTCAGGGTGTTGGGCCACTTCGAGAAGCCACTGTTCCTGGAGCTGTGCCGCCACATGGTGTTCGTGGAGCtgcaggagggggaggggctgtTCCGGCCCGGGGACACGGACGACAGCATCTTCGTGGTGCAGGACGGCCGGCTGGAGCTGTGTGTGCAGGAACCGGATGGGACAGAGGCGGTGGTGAAGGACGTGCTGCCAGGAGATAGTGTCCACAGCCTGCTCAGCATCTTGGACATCATCACTgGTTACCCCGCCCCCTATAAGACAGTGTCTGCTCGAGCTGCCGCCCGCTCCACTGTGCTCCGCCTCCCAGCCACTGCCTTCCAGTCTGTGTTTGAGAAATACCCCGAGACCCTCGTCCGTGTCATACAGatTATCATGGTGCGTCTGCAGAGGGTGACGTTTCTGGCACTGCACAACTACCTGGGCCTGACGACCGAGCTCTTCAACccggaGAGCCAGGCCATCCCTCTGGTGTCAGTGTCCAGTGTGATCGGGGGGGAGGGCAGCCCTGGCCGGACGCCCCGCCAGGCAGTGAGGAGTGTGGTGTGTGATGGTGCCTCCTTCAGGAAGAGCCGTTCCCTGTCCATGCCAACAGAGAGCACGGGGGGTGCTGTGCCCAGCAGCTCTGACCTCAGCATGGCCAAGGTCAGTGCCATCTTCCAGGCAGCCAAAAGTGACCTGCTGAGGCTCATACAGCTCCAggAGCCCAGTCTGCTGGAAGGCAGGGTGACACTTCATCAGGTGAAGGCTGGCACTGTGGTGGCACGGCAGGGAGACCAgGATGTCAGTGTGCAGTTTGTGATCTCTGGGCTGCTGCACGTGTACCAGCGCATGATTGACAGGGAGGAGGACACCTGCCTGTTCGTGACGCACCCAGGGGAGCTGGTAGGGCAGTTGGCCGTGCTGACCGGCGAGCCGCTGATCTTCACTGTGCGTGCACTACGCGACTGCAGCTTCCTGTCCATCAGCAAGACGCACTTCTATGAGATGATGCGGATAGAGCCCAGTGTGGTGCTCAGCGTGGCTCACACCGTTGTGCGCCGGATGTCCTCCTTTGTGCGGCAGATCGACTTCGCGCTGGACTGGATGGCTGTGGAAGCGGGGCGTGCTGTCTACAGgcaGGGCGACCGCTCTGACAGTACATACATCGTGCTGACTGGCCGGCTGCGCTCCGTCATTATGAAGGACGACGGGAAGAAGGAGCTGACTGCTGAGTATGGCCGGGGCGACCTCATCGGAGTGgtggagGCTCTGACCCACCAGCCCAGGGCCACCACAGTGCACGCGGTGCGGGACTCGGAGCTGGCCAAGCTGCCTGAGGGGGCACTGAGCTCCATCAAGAGACGCTACCCCCAGgtgGTGACCAGACTGATTCACCTGCTGGGACAGAAGATCCTGGGGACACTGCAGCAGGTCAATGGCTCCTTGCATGCACGGGGCCTGGCTCTGCACACTCCCAGCAGTAAGTGGGATGTGGGGAACCCCGCCTCTAACCTGTCCACTGTGTCCATCCTGCCGGTTAGTGAGGACGTCCCACTGACTGCCTTCGCCCTGGAGCTGCAGCACGCGCTTGGCGCCATCGGTCAGCCCCCtgtccaTGAGTACCGCCTGTCCAGCTGGCTGGGACAGCAGGAGGACATCCACCGCATCGTGCTGTACCAGTCTGACAGCACGCTCACCCCCTGGACACAGCGCTGCATCCGCCAGGCAGACTGCATCCTCATCGTGGGGCTGGGGGAGCAGGAGCCCAGCGTCGGGGAGCTGGAGCGGATGCTGGAGGGCAGTGCGGTCCGTGCCCAGAAGCAGCTGGTGCTGCTGCACCGGGAGGATGGACCTCCCCCCACCGGCACGAAGACCCCTGACCGGCACTCCGATTTCTCCCGGCTGGCACGTGTCCTGACGGGCAATGCCATTGCCCTGGTGCTGGGGGGGGGTGGCGCCAGGGGCTGCTCCCAGGTGGGCGTGGTGCGGGCGCTGTATGAGGCCGGCATCCCGGTGGACCTGGTAGGCGGCACCTCCATCGGCTCCCTGATGGGGGCGCTGTACGCAGAGGAGAGGAGCCACAGCCGCATGAGGGTCCGGGCCAGAGAGTGGGCacggGAGATGACCTCTGTGTTTAAGCGCGTGCTGGACCTCACCTACCCTGTCACCTCCATGTTCACTGGAGCCTCCTTCAACAACAGCATCAGCGCCGTCTTCAAGGGCCGCCAGATAGAGGACCTGTGGATCCCTTACTTCAACATCACCACAGACATCACCGCCTCTGCAATGAGAGTACACACTGACGGCTCTCTGTGGAGGTACGTGCGTGCCAGCATGTCCTTGTCGGGGTACCTGCCCCCCCTCTCGATTGACGTGGGCAGCCAGGACGAGACCCACCTGACCAACTACGGCGACTCGCTGTCTGGCTGGTGGCTGCTATGGAATCGCTGGAACCCCCTGGCCAAGAAAGTCAAGgtgcTAAACATGGCGGAGATCCAGACTCGGCTGGCATACGTGTGCTGCGTGCGGCAGCTGGAGTCCGTGAAGAGCAGCGAGTACTGCGAGTATATCCGGCCGCCCATCGACCGCTACGGCACACTGGACTTCGCCAAGTTCGATGAGATCGCGGAGGTGGGCTATCAGCACGGTCAGACCGTGTTCAACGTGTGGAGCCGCAGTGGCGTCATCGACCAGATGCTGAAGGACCGGCACCAGGAGGACACCCACAGACCCAAGGGCAGCCatgtgaTGGCTTGTCCAAACGCGTCCTTTACTGACCTGGCTGAGATTGTGTCCAGGATTGAGCCAGTCAAACCAGTACACGTGGATGACGAGTCAGATTACCAGACAGACTATGAGGAGGAGGCCCTGGAGTCCGCCCTGTCAGACTTCGACCCGTCCAATCAGAACAGTGAGAACACTGAGGGGGAGGAGACTGGAGACACGgatGAGGAGATGGAGCTGAGGTCCAGGCGGGTGTCCAGACAGCCCCCCCCGTCAGAGAGTGATCACTAACAGGGGGGGCAGGGAGGCAGCTGTGACCCCTCCATTTCCTGACCCCATCCCAACCCCTGCATCCCATCTCTGCAGCATATGGGAGGGAGCGCCCAGAAAGTTGTGAAGAGCCCATCTCAGGACAGGACAGAGTGccaaaccccccaccccccaccccccacccccatctccGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020228 True 3690 mRNA 0.62 34 13597969 13613378

Neighbor

gene id symbol gene type direction distance location
AMCG00020226 NA coding upstream 2518 13592096 ~ 13595451 (+)
AMCG00020222 clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903 coding upstream 12019 13583281 ~ 13585950 (+)
AMCG00020223 abca2 coding upstream 18794 13545411 ~ 13579175 (+)
AMCG00020225 NA coding upstream 81202 13513554 ~ 13516767 (+)
AMCG00020217 pou5f3 coding upstream 136488 13456679 ~ 13461481 (+)
AMCG00020227 NA coding downstream 12485 13625863 ~ 13639928 (+)
AMCG00020232 NA coding downstream 119262 13732640 ~ 13736452 (+)
AMCG00020247 NA coding downstream 141557 13754935 ~ 13759675 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding downstream 208383 13821761 ~ 13824208 (+)
AMCG00020243 alad,hem2,LOC106563307 coding downstream 226175 13839553 ~ 13846985 (+)
G61774 NA non-coding upstream 1243 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 246435 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 248823 13348855 ~ 13349146 (+)
G61672 NA non-coding upstream 253930 13343757 ~ 13344039 (+)
G61671 NA non-coding upstream 254588 13343143 ~ 13343381 (+)
G61841 NA non-coding downstream 95457 13708835 ~ 13709496 (+)
G61871 LOC100846954 non-coding downstream 137709 13751087 ~ 13751363 (+)
G61904 NA non-coding downstream 263933 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 274773 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 521920 14135298 ~ 14136287 (+)
G61675 NA other upstream 247257 13349677 ~ 13350712 (+)
G61491 NA other upstream 978152 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1055708 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1183018 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2297937 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 173636 13787014 ~ 13792944 (+)
G61894 NA other downstream 219792 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 250099 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 269447 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 335048 13948426 ~ 13951047 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_11476139_11503761 PNPLA7 coding CI01000006 null 11476139 ~ 11504598 (+)