Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020229 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 13664076 ~ 13665592 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0035971 | peptidyl-histidine dephosphorylation | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| id | description |
|---|---|
| K01112 | PHPT1; phosphohistidine phosphatase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020229 | True | 699 | mRNA | 0.51 | 3 | 13664076 | 13665592 |
| TU77394 | False | 631 | TUCP | 0.51 | 3 | 13664087 | 13665585 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020231 | NA | coding | downstream | 856 | 13650589 ~ 13663220 (-) |
| AMCG00020224 | NA | coding | downstream | 75148 | 13586380 ~ 13588928 (-) |
| AMCG00020220 | NA | coding | downstream | 193220 | 13469810 ~ 13470856 (-) |
| AMCG00020219 | NA | coding | downstream | 236665 | 13408705 ~ 13427411 (-) |
| AMCG00020221 | NA | coding | downstream | 260836 | 13400114 ~ 13403240 (-) |
| AMCG00020237 | NA | coding | upstream | 6703 | 13672295 ~ 13684406 (-) |
| AMCG00020236 | NA | coding | upstream | 25335 | 13690927 ~ 13702190 (-) |
| AMCG00020235 | NA | coding | upstream | 43224 | 13708816 ~ 13710669 (-) |
| AMCG00020240 | NA | coding | upstream | 46190 | 13711782 ~ 13715191 (-) |
| AMCG00020238 | NA | coding | upstream | 53838 | 13719430 ~ 13722948 (-) |
| G61803 | NA | non-coding | downstream | 10697 | 13578409 ~ 13653379 (-) |
| G61729 | NA | non-coding | downstream | 214014 | 13447002 ~ 13450062 (-) |
| G61696 | NA | non-coding | downstream | 325975 | 13337016 ~ 13338101 (-) |
| G61593 | NA | non-coding | downstream | 656410 | 13007422 ~ 13007666 (-) |
| G61558 | NA | non-coding | downstream | 858643 | 12804670 ~ 12805433 (-) |
| G61872 | NA | non-coding | upstream | 85492 | 13751084 ~ 13751298 (-) |
| G61920 | LOC107746475,LOC107567702,LOC107595988,LOC107697985 | non-coding | upstream | 123799 | 13789391 ~ 13792931 (-) |
| G61927 | NA | non-coding | upstream | 156156 | 13821748 ~ 13823540 (-) |
| G61943 | NA | non-coding | upstream | 247580 | 13913172 ~ 13914166 (-) |
| G62066 | NA | non-coding | upstream | 679705 | 14345297 ~ 14401302 (-) |
| AMCG00020230 | NA | other | downstream | 67159 | 13595518 ~ 13596917 (-) |
| AMCG00020212 | NA | other | downstream | 439564 | 13216996 ~ 13224512 (-) |
| G61589 | NA | other | downstream | 665853 | 12997838 ~ 12998223 (-) |
| AMCG00020180 | tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 | other | downstream | 1154139 | 12484369 ~ 12509937 (-) |
| AMCG00020159 | NA | other | downstream | 1611865 | 12001700 ~ 12052211 (-) |
| AMCG00020252 | atp6v1g1,LOC107566902,LOC108259956 | other | upstream | 139428 | 13805020 ~ 13808333 (-) |
| AMCG00020256 | NA | other | upstream | 145821 | 13811413 ~ 13813003 (-) |
| AMCG00020249 | NA | other | upstream | 159097 | 13824689 ~ 13834729 (-) |
| G62011 | NA | other | upstream | 464086 | 14129678 ~ 14131569 (-) |
| G62061 | NA | other | upstream | 664930 | 14330522 ~ 14332407 (-) |
