AMCG00020230


Basic Information

Item Value
gene id AMCG00020230
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13595518 ~ 13596917 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020230
ATGGGGGTGCTGTCAGGCCTGGCGCAGGGCCTGGTGCGGGGGGCGGACCGCATGGCCCAGTTCACCAGCAAGCGAGGCCCGCGGACCTTCTACAAGGGCCGGGGTGCGCGCAGGACAGGCGTGCTGACCAGCAGCGGTAAGTTCCTGCGCCTGCCTGCCATGGTGCCCCAGCTGGTTGTGCCGCTGATGGAGGGGTTCCGGCTCAAGCCCTACGTGTCATACCGTGCCCCCACAGGCTCTGagccccccctcacccccaagGCGCTGTTCACCCAGACCGTGGCTCCTGCCGTGGAGCGCGACCTGCGCGAGGGCCGCTTCCACCCCCAGGAGCTGGAGCGCTATGGGTTCGAGCCCTCACAGGATGGCAAGCTGTTCAAGCTGTACCCCAAGAACTACGTTCGCTAG
>TU77373
CCCCTtctcttccctcccctccctccaaGACTGCAAAACTTTATTGCACTCTTTCTCTCCAATCTCAAAACAGCTACACCGTTTCTGCCCCCCATACATTGGCAGGGACGCTTCCCAGCATCCCGCTCTCCGATTGGCCCACTGCGCCTAGCCTCCACCAATCGGAGTCGTTTTTAGTCAAGGTCGAATCACTTCCTCCTACTGCGGGTGAGGATAGCTGTGATCAAGAATAactccatctctctcacacGTTGCTGTCTGCTGCCACTGCTTCCTCCAAGGACTCAGCCTCTTGTCCCCCTGGCTGCATCGCACTCTACTGTGTTAAACCATCCCAGTGTGCTGCCCCTGGccctgctgttgttgctgtgtgtcTTTCTTGTTGCTGTGGGAGGCAGAGATGGGGGTGCTGTCAGGCCTGGCGCAGGGCCTGGTGCGGGGGGCGGACCGCATGGCCCAGTTCACCAGCAAGCGAGGCCCGCGGACCTTCTACAAGGGCCGGGGTGCGCGCAGGACAGGCGTGCTGACCAGCAGCGGCTCTGagccccccctcacccccaagGCGCTGTTCACCCAGACCGTGGCTCCTGCCGTGGAGCGCGACCTGCGCGAGGGCCGCTTCCACCCCCAGGAGCTGGAGCGCTATGGGTTCGAGCCCTCACAGGATGGCAAGCTGTTCAAGCTGTACCCCAAGAACTACGTTCGCTAGAGAGAATTGGGAGGGGAGAAAGACCATTGCCATGCACTGTGATACAGAGACTGAACTGGAGACTTTGTGCAGGACTGTACCCCAGGGACTACAGACCCCAGCACTGTAGTCACTGCACTTGACATCTATAAGGGACCCCCCATtcattaaacaaactaaaataaaactgcaaagaaataaca

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020230 False 408 mRNA 0.68 1 13595700 13596107
TU77373 True 891 TUCP 0.58 3 13595518 13596917

Neighbor

gene id symbol gene type direction distance location
AMCG00020224 NA coding downstream 6590 13586380 ~ 13588928 (-)
AMCG00020220 NA coding downstream 124662 13469810 ~ 13470856 (-)
AMCG00020219 NA coding downstream 168107 13408705 ~ 13427411 (-)
AMCG00020221 NA coding downstream 192278 13400114 ~ 13403240 (-)
AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding downstream 207521 13368648 ~ 13387997 (-)
AMCG00020231 NA coding upstream 53672 13650589 ~ 13663220 (-)
AMCG00020237 NA coding upstream 75378 13672295 ~ 13684406 (-)
AMCG00020236 NA coding upstream 94010 13690927 ~ 13702190 (-)
AMCG00020235 NA coding upstream 111899 13708816 ~ 13710669 (-)
AMCG00020240 NA coding upstream 114865 13711782 ~ 13715191 (-)
G61729 NA non-coding downstream 145456 13447002 ~ 13450062 (-)
G61696 NA non-coding downstream 257417 13337016 ~ 13338101 (-)
G61593 NA non-coding downstream 587852 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 790085 12804670 ~ 12805433 (-)
G61550 NA non-coding downstream 852081 12719367 ~ 12743437 (-)
G61872 NA non-coding upstream 154167 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 192474 13789391 ~ 13792931 (-)
G61927 NA non-coding upstream 224831 13821748 ~ 13823540 (-)
G61943 NA non-coding upstream 316255 13913172 ~ 13914166 (-)
G62066 NA non-coding upstream 748380 14345297 ~ 14401302 (-)
AMCG00020212 NA other downstream 371006 13216996 ~ 13224512 (-)
G61589 NA other downstream 597295 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 1085581 12484369 ~ 12509937 (-)
AMCG00020159 NA other downstream 1543307 12001700 ~ 12052211 (-)
G61269 NA other downstream 1893873 11695691 ~ 11701645 (-)
AMCG00020229 NA other upstream 67159 13664076 ~ 13665592 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 208103 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 214496 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 227772 13824689 ~ 13834729 (-)
G62011 NA other upstream 532761 14129678 ~ 14131569 (-)

Expression


Co-expression Network