AMCG00020232


Basic Information

Item Value
gene id AMCG00020232
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13732640 ~ 13736452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020232
GGTAACCCAGCCTCCTCCGCACACACACCTGTCCCGGCGGTTCCCGGTTTCTTTCCGAATAACTGATCGAACTAACCGACATCGCCAGCCTCTCCTCTCCCGCAGCGACATGAGCGCCCAGGCGACAGACAGCGAGCTGACCCCCGTGTCTTTGCAGGACGGGGACGGGGAGCCTCGGCTCAACTCTGCTGGTCTCCCAAGCACAACCTCCCTCCCCCGCGGCCAGGACGGCAACGCCGGCACCCAGGACCCAGATCCTTCAGAGGAGTCGCGGCTGAAGCCCTCTGGAGGCAGGGAGCACAGcggcgaggcaggagaggaagcCGGCCCGGGCGAGGCGGTGGGGCAGTGTGTGGACCACGAGTCGGAGCTGAACTGGTTCTGCATCACGGAAGGGAAACGCGTCTGCTCCCAGTGCCCCATCGTGGGCTCCTGCAGGGGACACAGCGTCAGTCCGGTGGAGCGCAGAGCGGCCGCGGTCCGAgaTCGGCTGGTGGACGTCTGTGagaagctgcagctgcaggccCAGCGCATCGAGCGTTTCCTGAGCGACACGCTGTCCACCCGCGAGCACGGCCTGCAGGTGGCAGCGAGCAGTGCGCGGGAGCAGTGTGTGCGGTGGGGAGCAGGGGTGCGGGGGGCAGTGGAGGAGGCGGAGCAGTGGGTGCTGGAGGCGGTGCAGAGGGAGGACGAGCGTGTGCGGAACAGCCTGCTCACCCAGCGCGCCCACTGGGCACAGGGCCTGGGCAGGCTGGGCACGCTGCGGGCCGAGCTGGTGCGGCTGCTCACTGAAACCACAGACTCACAGCTGGTGAGCTCCAGCCAAGAGATGTCAGAGAGggtggaGCAGgcggagggggtgggggagccCCATGACTCGGACaagctgacctttgacctcagGTGCTGTGAGAGCCCCCTGTTGATGAGCATGTGGGTCAGTGCCACCATCCTGAGTCACCctgCGGAGAACTCCCTGTGCTTTGATGAGGGGACGGTCAGCCCACTGCTGTCCCTGTCTGACGATGGCCGCTGCCTGACCTTCCTGCCCCGTCGGCAGCGGCAGCCCCGCCTCTACAACCCTGGTCGCTTCGACAGCTGGCCCAATGCGCTGTGCGGCCGCGCCCTGGCCTCTGGGCTGCACCGCTGGACCCTATCGCTGGAGGGCAGCCAGGCCTTCAAGGTGGGGGTGTGCTACGGCAGCATGGAGCGGAAGGGCTCCGGGAACGCAGCACGCCTCGGCTACAACACTGGGTCCTGGGTCCTGTCCTACTACGAGAGCAAGTTCTGCTTCTCCCACGCGGGCCGGCACCTCGCCCTGCCCGTGCTGTGCCGGCCCAAGTGgctggctgtgctgctggactTCCAGGGGGGGACGCTTGTGTTCGCGGACAGAGAGAGTGGGGCTGTGCTGCACGCCCACCACCAGGCCTTCAGCGAGGCCCTGTACCCCGCCTGTGCCGTCGCACACCAATCCCTCCATCTCCTCAGCcactgagggagagggggacTGCAAAACTGGAAAACACTGTTTGATACTTTCCCTCACTCTCACTGTATTGtcaccgtctctctctcccactgtgTCATTCTCActgtcactctctcactctattGTCACTCCCattcactcacactctctctctctgctctgagGATTTTGAGGCAGGTGTTTTACAGCCTCCTCTAGATTTCTGAGGTTACTGAGTGactgtgacatcactgacaGGGCCCTTCCATGAACAGAATGCTGGGACTCTCTGATCACAACACCcccgtctgtgtgtctgtaaataTATGATATTGTATACGTACTGTGTCAATTAAATACTGAACAATCATAAAATGTCACTGTTGTGTAGAGCAGTCGGTACCCAGTGTGTCCTACAGAGGGAGACATTACACTATCgcaaagacagaaagaaaaaaagagacacacagagatgagCTCCTGAATAAATTCCTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020232 True 1968 mRNA 0.62 6 13732640 13736452

Neighbor

gene id symbol gene type direction distance location
AMCG00020227 NA coding upstream 92712 13625863 ~ 13639928 (+)
AMCG00020228 NA coding upstream 119262 13597969 ~ 13613378 (+)
AMCG00020226 NA coding upstream 137189 13592096 ~ 13595451 (+)
AMCG00020222 clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903 coding upstream 146690 13583281 ~ 13585950 (+)
AMCG00020223 abca2 coding upstream 153465 13545411 ~ 13579175 (+)
AMCG00020247 NA coding downstream 18483 13754935 ~ 13759675 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding downstream 85309 13821761 ~ 13824208 (+)
AMCG00020243 alad,hem2,LOC106563307 coding downstream 103101 13839553 ~ 13846985 (+)
AMCG00020244 NA coding downstream 137329 13873781 ~ 13874299 (+)
AMCG00020246 NA coding downstream 139189 13875641 ~ 13877226 (+)
G61841 NA non-coding upstream 23144 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 135914 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 381106 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 383494 13348855 ~ 13349146 (+)
G61672 NA non-coding upstream 388601 13343757 ~ 13344039 (+)
G61871 LOC100846954 non-coding downstream 14635 13751087 ~ 13751363 (+)
G61904 NA non-coding downstream 140859 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 151699 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 398846 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 399968 14136420 ~ 14136936 (+)
G61675 NA other upstream 381928 13349677 ~ 13350712 (+)
G61491 NA other upstream 1112823 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1190379 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1317689 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2432608 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 50562 13787014 ~ 13792944 (+)
G61894 NA other downstream 96718 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 127025 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 146373 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 211974 13948426 ~ 13951047 (+)

Expression


Co-expression Network