AMCG00020238


Basic Information

Item Value
gene id AMCG00020238
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13719430 ~ 13722948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020238
ATGGCGTCATTGCCATGGAGAGAGGCCGGGCGGCTCTGGACGGCGCGGCTGGAGGTGTCATCGGCCTGTGGATTGCCCTGGCAGTTGGTGGATAAGTCAGCAGGCCAGTCTGTTGGTCAGTGTGGCGACGGGGATGCCAGGCCCTGCCCCTCAGGTCCCGGGGTGGAGAGCCAGTGTCTGGAGGTGGGGGTGGCTGTAGCCATGGAGGCGGCAAGAGAGTGCTGTAGCGAGGACGCACTGCTGGCCAGGCTGACATGCTCAGACCAAGGTCATGTGACGGGGGCGGTGGAGGAGCTGCAGATGGGGGTGCAGGAGGACAGGGCGGGGCTGGCATGTACCATACTGGACCATCCCGACAGCGAGGGCCTCATTAGTGCGCTGTGCCACCTGCTCACCTCCACGGACAGCAGGCTGTGCAGCAATGTGGCATACCTGGTGGGGGTGCTGGCAGAGAGCGAGGCGGGGGTGCGGGGGCTGCTGGCAGCGGGGGGTGCTGGTTTGCTGGGGGCACTGCAGAAGCTGCTCAGGGACCATGACCCCGAGACCGCAGCCAACAGTGCCGGAGCCATCGCCACACTgGCGGAGAGCAGTGCTGGGCGGCAGTGTGTGTTGGGCTCAGAGGTGTTCAGGGAGCTGGTCAGTGGGGTGTGTGGGCTGCTGGACCTGGTCAGTGAGGAGGCAGAGCTCAGTTACGAGGAGGGGGTCAGCAACGCGGCGCTGGTGCTGGCCAGGCTGTCGCTGTGTCCAGCTGGCTGTCAGCAGCTCCTGGCCCACCCTGAAGCCGCGCTAGCCCTGCACCAGCTGAACCGCTGCCTCACCCACGGCAGCACA

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020238 True 831 mRNA 0.66 4 13719430 13722948

Neighbor

gene id symbol gene type direction distance location
AMCG00020240 NA coding downstream 4239 13711782 ~ 13715191 (-)
AMCG00020235 NA coding downstream 8761 13708816 ~ 13710669 (-)
AMCG00020236 NA coding downstream 17240 13690927 ~ 13702190 (-)
AMCG00020237 NA coding downstream 35024 13672295 ~ 13684406 (-)
AMCG00020231 NA coding downstream 56210 13650589 ~ 13663220 (-)
AMCG00020233 NA coding upstream 67 13723015 ~ 13730484 (-)
AMCG00020239 NA coding upstream 14786 13737734 ~ 13745433 (-)
AMCG00020234 NA coding upstream 37466 13760414 ~ 13767183 (-)
AMCG00020253 fbxw5,LOC107595987 coding upstream 70249 13793197 ~ 13797273 (-)
AMCG00020248 NA coding upstream 77645 13800593 ~ 13804321 (-)
G61803 NA non-coding downstream 66051 13578409 ~ 13653379 (-)
G61729 NA non-coding downstream 269368 13447002 ~ 13450062 (-)
G61696 NA non-coding downstream 381329 13337016 ~ 13338101 (-)
G61593 NA non-coding downstream 711764 13007422 ~ 13007666 (-)
G61558 NA non-coding downstream 913997 12804670 ~ 12805433 (-)
G61872 NA non-coding upstream 28136 13751084 ~ 13751298 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding upstream 66443 13789391 ~ 13792931 (-)
G61927 NA non-coding upstream 98800 13821748 ~ 13823540 (-)
G61943 NA non-coding upstream 190224 13913172 ~ 13914166 (-)
G62066 NA non-coding upstream 622349 14345297 ~ 14401302 (-)
AMCG00020229 NA other downstream 53838 13664076 ~ 13665592 (-)
AMCG00020230 NA other downstream 122513 13595518 ~ 13596917 (-)
AMCG00020212 NA other downstream 494918 13216996 ~ 13224512 (-)
G61589 NA other downstream 721207 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 1209493 12484369 ~ 12509937 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 82072 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 88465 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 101741 13824689 ~ 13834729 (-)
G62011 NA other upstream 406730 14129678 ~ 14131569 (-)
G62061 NA other upstream 607574 14330522 ~ 14332407 (-)

Expression


Co-expression Network