AMCG00020242 (ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739)


Basic Information

Item Value
gene id AMCG00020242
gene name ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13821761 ~ 13824208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020242
CCATAATAAAGTGTGGCGGAAGCAGGATAAAAACCCCAGAGTGAAGTGTGGCGGAAGCAGGATAATAACCCCAGAGTGAAGTGTGGCGGAAGCAGGATAATAACCCCAGAGTGAAGTGTGGCGGAAGCACACAGAGTGACAGTTAGCCTCTGTGTAGTGGTTGTCCTGGAAacggagagggggaggaggagggcagcgCGGGATCGCCGCATGAATCTGTTTCCGACGCGGacggagagaaggagggaggccGGCAAACTATCGATACTGCAGACCCGCACCCGCAGCGCACACAGAGGTTGTAGAAGCCCAGACGGGAGTCGCTCAGGGTGTCGGCCAGGGCCAGGCCGCAGCACCGGCAGGATGACCCAGCAAGGAGCCGCGCTGCAGACCTACAACAACGAGCTGGTCAAGTGTATCGAGGAGCTGTGTTTGCGGAGGGATGAGCTGAACCGGCAGgtgcagctggaggaggaggagaagcgGCGGCTACAGTCAGACATAGGTGTGCTGACTGAGAAGCTGGGCCGCCTGAACGAAAGCCTGGCTCGCAAGATGGCCGCCCGCAATGACTTCGACCGCACCATTGCCGAGACGGAGGCCGCGTACATGAAGATCCTGGAGAGCTCTCAGACTCTGCTCAGTGTTCTGAAGAGGGAGACGGGGAACCTGAGCAAGGTCAGCGAGCCCCGGGGGGGGCACAAGGACCACTGACCCCACCTGGGTGACAACCAACATTAACCACAGCACTGCCCACCCCCCCGGCCTGCCTGTGAAGCCGCTGAAAGAACCGAACACTGATGACACACTGCACTCGGTCCACAGCcacctgcatgtgtgtgtgtctcgctCTGCATCTTTCTGTCTCCTGTCTTCCACATCTGTATATGTCTGTCCATCTCCTTACCCATCTGACAAACAGGCAGGGTAGGACAGCGGCTGGAACCCGTAGTAGCGGGTCTGCAGCGTGACTGTGGGCTTCAGAGCTGGGAGTGTGAGCACACAGTTTCCCCCCACAAACCTgtctatatatgttttataaaactatacatttgcatattttaataaacttgttCTTTAGTA

Function

symbol description
ssna1 Predicted to be active in centrosome and ciliary basal body. Orthologous to human SSNA1 (SS nuclear autoantigen 1).

NR:

description
PREDICTED: Sjoegren syndrome nuclear autoantigen 1

GO: NA

KEGG:

id description
K16780 SSNA1; sjoegren syndrome nuclear autoantigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020242 True 1083 mRNA 0.57 3 13821761 13824208

Neighbor

gene id symbol gene type direction distance location
AMCG00020247 NA coding upstream 62086 13754935 ~ 13759675 (+)
AMCG00020232 NA coding upstream 85309 13732640 ~ 13736452 (+)
AMCG00020227 NA coding upstream 181833 13625863 ~ 13639928 (+)
AMCG00020228 NA coding upstream 208383 13597969 ~ 13613378 (+)
AMCG00020226 NA coding upstream 226310 13592096 ~ 13595451 (+)
AMCG00020243 alad,hem2,LOC106563307 coding downstream 15345 13839553 ~ 13846985 (+)
AMCG00020244 NA coding downstream 49573 13873781 ~ 13874299 (+)
AMCG00020246 NA coding downstream 51433 13875641 ~ 13877226 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding downstream 74836 13899044 ~ 13911515 (+)
AMCG00020260 LOC106565473,LOC102201489,LOC106563238,LOC102777117 coding downstream 95383 13919591 ~ 13944753 (+)
G61871 LOC100846954 non-coding upstream 70398 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 112265 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 225035 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 470227 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 472615 13348855 ~ 13349146 (+)
G61904 NA non-coding downstream 53103 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 63943 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 311090 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 312212 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 313218 14137426 ~ 14137829 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 28817 13787014 ~ 13792944 (+)
G61675 NA other upstream 471049 13349677 ~ 13350712 (+)
G61491 NA other upstream 1201944 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1279500 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1406810 12408962 ~ 12414951 (+)
G61894 NA other downstream 8962 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 39269 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 58617 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 124218 13948426 ~ 13951047 (+)
AMCG00020273 NA other downstream 371576 14195784 ~ 14232268 (+)

Expression


Co-expression Network