AMCG00020245 (LOC107746475,LOC107567702,LOC107595988)


Basic Information

Item Value
gene id AMCG00020245
gene name LOC107746475,LOC107567702,LOC107595988
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13787014 ~ 13792944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020245
atGATGTATGTCTTCTGTCCCCAGGCGTCCCATGAGGGCCGGTGTGAGTTGGAGCGCGTGCAGTGTGGGGCGTGCGGGGCGCAGGTGCGGCGTGGAGAGCTGGAgcggcacagagagagggagtgtgaaGAGAGGAGCCTCAACTGCAAGTACTGCAAAGTCACCTTCAGCTTTAAGAACATCAAGgcCCATGATGAGGTGTGTGTGAAGTTCCCTCTGCAGTGCGAGGGCTGCGGGAAGAAGAAGATTCCCAGAGAGAAGTATTCTGACCACACCAGATCCTGTGGGAGGTTTAAGACGCCGTGTCAGTACAGCGCAGTGGGCTGCAAGACTGTGCTGGAGAATGAGAAGCAGAGTGAGCACGAGCAGAGCAGCATCCTCGAGCACATGGGCCAGCTGCTGTCGGTGGTGCGCACCCTGCGTGAGGTGGAAGACTCCACGCACATGCTGGACCAGGAGAGGATTGAGAACCTTAACAAAAAGATGCATCAGATGGAGCGCTCAATGGCAATGAAGGAGCTGCACCTGGCTGAGACAGAGCAGCAGCTGCGGGAGCTTGAGTTCTGCACCTACGATGGCGTCTTCGTGTGGAAGATCACCTTCTATTCCAGTAAGTATGGCTATAAGATGTGCCTGCGACTGTACCTCAATGGCGACGGGACGGGCCGCGGCACTCACCTGTCCCTGTTCTTCGTGGTGATGAGGGGGAAAAATGACGCCTTGCTCAAGTGGCCATTCAGCCAGAAGGTGACCCTGATGCTGCTGGACCAGAACAACAGGGAGCATGTGATCGACGCATTCCGGCCTGATgtcacctcctcctccttccagCGGCCGATCAGCGAGATGAACATCGCCAGCGGCTGCCCCCTCTTCTGCCCACTGGCAAAGCTGAGTGGCGCCAAGAGCTCTTACCTGCGGGATGACACCATCTTCATCAAGGCTATCGTAGACCTCACTGGACTCTGA
>TU77473
AGGTGACCCTGATGCTGCTGGACCAGAACAACAGGGAGCATGTGATCGACGCATTCCGGCCTGATgtcacctcctcctccttccagCGGCCGATCAGCGAGATGAACATCGCCAGCGGCTGCCCCCTCTTCTGCCCACTGGCAAAGCTGAGTGGCGCCAAGAGCTCTTACCTGCGGGATGACACCATCTTCATCAAGGCTATCGTAGACCTCACTGGACTCTGACCAGTGCCGGCACCTGCAGGGGGCGGAGGAAGGGGTACCTGTCACAAACAGGGCAGAGAGCTAGACGCTTGGGCACACAGCAGACTGCTAGTCCGAGTTCAGCAAGCGCATGTAACGGGGCTCATCAGGTGTATGAGCTTATTACAGgtgacgtaacccctctgtCAATCAGAACGGTGATAAGCCTCCCAAGTCAGGAGACAAGGTATTTTGGCGTAGCAAGGTTTATTGCTCTACTGGGTGGAACTGCTGCGGTGCGGATCGCTCGGAGGAGGATCTGTGCGACACAGGGAGCTCCGACTgcaccagctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatctgagtCAGTAGAATTTACATCATAAATGCACAGATTATACTGTATGAATGATATCATGTGTGCATTTATACACCCAGGTCCACTCCAATTACATAAAGCGGCCCCAATTACAAAGAATAATGAGTGTTCGTCAGTGCCCTGACTGGCTTGCTGTTTGCTGACCCGCTCGATCCttattcattctttttaaaGCCTACCCTCCACTGTTGCCTCACTGATGCAAGAGTCTAGACTGTGACCTTCCACTCTgtatcactatatatatatatatagataaatatatctgtgtgtgttatacTGCTCTGTTGCTGATGTTTCCAGACTGCTGTATtgggagcagagcagtgtgcCCCACAGACatgcatgcgtgtgcgtgtgtgtgtgcagtgatcTCAGTTGTATGGAAAATGACCAGGTGACTTTCAAACACAGGTTCTAACATCTTTCTAACATCAGTCACCACAGTGAATGTGGTAACTCCCCAGAGCACACAGGCCAGTGAAAAGAATATCACCCCCGTGGCAGGgcggtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcctctgcctctgcttCTGGACACTGAGCAGATCAGGGACAGACCTGGGAAGATGCAGGGCTGTATTCCCACATCAATCTGCAGAGCCATGAAGGCTTCTGTTAGAGTCACACctcacagtgagagagagatggtagAGAGAGTCTAGTTCCccttaatattgaaaaataaaaaagacgtAAATCTTTCTGCTTAGTTATAATTATGTGATTATGGTTTCATGGGCTCCAGAAGGCTCGTCTGGCCACAGTGCTCGGCAGAGTGCTGGTTGGGCCCTGTAATCCAGACCACAACATACAGAACTACTAATGTATATAGGTCCTGTCCCAGCAGACAGAAGGCATTTTCAGAGCTGCCTGTGGAGTGGATGCATTGGGCAGAGGAGTGAGGACAAGTTGTCTGTCTCTCCACCTGCCTGGCTGCCTGcccgtctctgtgtgtgtgtgtgtgtgtgactcctGTACAACTGATGCACACTGTGTAAGGGGCCCAGCTGTATAGAGCTATACATATTCATTCATATCGTGGTCTAGGACATGATTTATTGTTATAGTCATATACTGGAAAAGCCCTGCATGCTTCCCCATAATGAAACAGCCTCTAAGGATggcaatattaaatataattattaattaaaataatataatattaatatatgaatataataataataataataataataataataataataataataataataataataataatacttattttatagaaaaataagtacattttataGAACCAGAGCCTGTACTGTGTAGGAAAGAGGTGGTTCCTGGACAGCAGAAGAGGGGAGGAGAGTGGGCAGTATTGTACTCCCACTACTTAAAACAGTTGCTTTAtccagcaatttattttttaatgatttgtatcACCTGAAATGATAGGGTCCGTCAGTGAGTGTGCTTGCTGCGactggaatgtttttttatgtgcatCTTATATAGCTCAGTATAATTATTGTATATAGACACTGACATTACTTTTAAGTAAGTTGACTTTTCTAGCtgtacagtaaattaaatgccAAAGTGCttagtaaatttaaaaataaatatagaacaattatatatagcatttaaatgcaaataaacacattgcatAAGATTGCCTATCACACGACTCAAGGCTAAGCCAGTGTGGGGAAGTGACTGAACCTTTGTGAAGGGAGACCTCTGCTGGTCACCGAGGTCTATGGCACCTGCCTTTAATCCAGCAAACAGTACTTGCAGTGAAATGCAGTGCAAATGAAAGTGCATcatagtatactgtagtgttGTGCAGTTCAATGCACTGTCGGAGGGTGTTACCTGTTACTTTCTTCCCCCTTGGTGGAGTGTAGCAGTGCCCCTACACTCCGATCAGCTCTCCTGACCACCCCAGGGCCGCCTATGTCCTCTGCCCTCTGTCCTTAGTCTCTGTGCTCCAGTTGTTTGTCGAACCCTGCACCAGCCCGAGCCCAGTGCGATTTCTTCCCCTGTGAAAACCCTCCCACATGGGTCGAGACCATATGATAGCATTGCCTGCTCAAGCACAATATTCTATGATTAATATGCAAtgataattacaaaaacatgacttgttttttaatacttacTTTAGCCTTTAATATTTACTACCAAATATGTAAAATTTCATATGTACTTGTACTGAAATTCTGTCTCCTCACAGCCTTCCACGTTTTACAGTTTTAcgttttacagttttacagattttcagttttttatgttttaatttaggtGCCTAAATGTAGTATAAACTTGCCACTGAATTCAAGTTTAAGTCTCAGTTCACTTATATATTATTGCCCTAAATCCTAATGACCTAATGAGGGAGACAGCACAGCATGCTACTATACTGTTTAcctgtgacatttaatttaatacttaATAAAGGTAAATCCAATGATG

Function

NR:

description
PREDICTED: TNF receptor-associated factor 2-like isoform X3

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020245 False 969 mRNA 0.57 8 13787014 13789985
TU77473 True 3127 lncRNA 0.44 2 13789762 13792944

Neighbor

gene id symbol gene type direction distance location
AMCG00020247 NA coding upstream 27339 13754935 ~ 13759675 (+)
AMCG00020232 NA coding upstream 50562 13732640 ~ 13736452 (+)
AMCG00020227 NA coding upstream 147086 13625863 ~ 13639928 (+)
AMCG00020228 NA coding upstream 173636 13597969 ~ 13613378 (+)
AMCG00020226 NA coding upstream 191563 13592096 ~ 13595451 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding downstream 28817 13821761 ~ 13824208 (+)
AMCG00020243 alad,hem2,LOC106563307 coding downstream 46609 13839553 ~ 13846985 (+)
AMCG00020244 NA coding downstream 80837 13873781 ~ 13874299 (+)
AMCG00020246 NA coding downstream 82697 13875641 ~ 13877226 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding downstream 106100 13899044 ~ 13911515 (+)
G61871 LOC100846954 non-coding upstream 35651 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 77518 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 190288 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 435480 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 437868 13348855 ~ 13349146 (+)
G61904 NA non-coding downstream 84367 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 95207 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 342354 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 343476 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 344482 14137426 ~ 14137829 (+)
G61675 NA other upstream 436302 13349677 ~ 13350712 (+)
G61491 NA other upstream 1167197 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1244753 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1372063 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2486982 11274024 ~ 11300032 (+)
G61894 NA other downstream 40226 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 70533 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 89881 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 155482 13948426 ~ 13951047 (+)
AMCG00020273 NA other downstream 402840 14195784 ~ 14232268 (+)

Expression


Co-expression Network