AMCG00020246


Basic Information

Item Value
gene id AMCG00020246
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13875641 ~ 13877226 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020246
ATGGTCTGCCGCCTTGCATTTGACTTTTGGACCAGGGAGAGTCGAGACTGGAAAGagaGCCAGAGCAGCGTGTGGCAGAGGAGCCAGGTTGGTGCCATTCCTGTTGGAGCACGAGGTTGGGACGAGCTGCTGCCATGGCTCCTCAGTGAGCGCAGAAGGGGGGTGCTGGCCCTACCCCAAACcaccctggaggaggaggggaggggcgAGGAGGGGCCCCCCCACACGGACTGTGCGGTGTGCTGGAGCCCCTTCGACAACGCGTTCCGTACACCCAAGCTGCTAACCTGTCGCCATGCCTTCTGCCTGGAGTGTCTGGCACGGCTCAGCCTGGCCTCGGCTCCAGGGGGGGCGCTGTGCTGCCCGCTGTGCCGCCGCCTCACCCCCCTCCGTGGCACCAGTGTGGCAGAGTTGCCCAGCGACCTTGCCCTGCTGGACCGGCTGCGGCTTGAGCCTCGGACCGTGGAGCTGCAGGATGGCCGGCTTTGGTACCGCGCCCCACCCCCGCCCCGCTCCTGGCTACGGCCCGCCCGGCCCACCATTTACACTCTCAGCCTGGACGTGGAACGCCGTCTGCGGCCTGGGCAGAACCTGGTGGGCCCAGCTGGGGAGGACGAGGGGGATCAGGAGGAGGGGAATGGGGGGGATGCAGAGGAGGGACTGGTTCCAGGCAGCGAGGAGCCCGACTGCTGGCTCAGTCCGCAGCTCCGGGTCTTCACCTATCTCACTGCTGGCATTTTCAttgtcctgctgctgctgctgctctcctTCCTGTGGCTGCGCAGGGACCTGTGGGGGATGACCGAACCCAGGGCCACCGACACACCCTAG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22157 RNF183; E3 ubiquitin-protein ligase RNF183

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020246 True 831 mRNA 0.67 3 13875641 13877226

Neighbor

gene id symbol gene type direction distance location
AMCG00020244 NA coding upstream 1342 13873781 ~ 13874299 (+)
AMCG00020243 alad,hem2,LOC106563307 coding upstream 28656 13839553 ~ 13846985 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding upstream 51433 13821761 ~ 13824208 (+)
AMCG00020247 NA coding upstream 115966 13754935 ~ 13759675 (+)
AMCG00020232 NA coding upstream 139189 13732640 ~ 13736452 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding downstream 21818 13899044 ~ 13911515 (+)
AMCG00020260 LOC106565473,LOC102201489,LOC106563238,LOC102777117 coding downstream 42365 13919591 ~ 13944753 (+)
AMCG00020265 fhod1 coding downstream 77261 13954487 ~ 13956067 (+)
AMCG00020262 LOC108432357 coding downstream 96188 13973414 ~ 13975559 (+)
AMCG00020264 fhod1,LOC107740454,LOC106562854,LOC107553095 coding downstream 110854 13988080 ~ 13995139 (+)
G61871 LOC100846954 non-coding upstream 124278 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 166145 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 278915 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 524107 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 526495 13348855 ~ 13349146 (+)
G61904 NA non-coding downstream 85 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 10925 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 258072 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 259194 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 260200 14137426 ~ 14137829 (+)
AMCG00020255 NA other upstream 2996 13863477 ~ 13872645 (+)
G61894 NA other upstream 40809 13833170 ~ 13834832 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 82697 13787014 ~ 13792944 (+)
G61675 NA other upstream 524929 13349677 ~ 13350712 (+)
G61491 NA other upstream 1255824 12615792 ~ 12619817 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 5599 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 71200 13948426 ~ 13951047 (+)
AMCG00020273 NA other downstream 318558 14195784 ~ 14232268 (+)
AMCG00020281 slc12a4 other downstream 590574 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2705660 16582886 ~ 16604658 (+)

Expression


Co-expression Network