AMCG00020247


Basic Information

Item Value
gene id AMCG00020247
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13754935 ~ 13759675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020247
ATGGCGGGCCCGGCGCTGCGGCTGTACCGGGGGCTGGAGGGCCTGTTCGCCGTGTACAAGCCGCCGGGAGTTCACTGGAAGCTCGTCCGGGACAGCGTGGCGACGAATCTGCTGAAAGAGCTGAATGCGGCAgtgcccccccccgccccccggccACAGGTGCGCTTCCTGCCGGTCAGTGCGTCCAGTGACGGCTCCCGGGAGCTGACCTTGACTGCGGCCAGAGTACCAGCGCTGGCTGACCACCCACTGGTCACAGGGCCGCAGTTTCAGGGTGTGAAGGTCGGGGTGGGTCACCGTCTGGACGCAGGCGCCTCGGGGGTCCTGGTTCTAGGAGACTACACTCTACAGGGGGAGCTGGGCAGAGCCACTGAGGATTTCTCCCACACTGGGCGTCTCATCGAGAGAGCCACGTACGGTCATGTGACGCAAGACAAACTTGAGAAGGTCCTAGCCATGATCGAGGGAGCCAATCAGAAAGCTCTGCTCCGgtaCTCCGGGGTGGACCTACAGACTCAGCGTGCATATGATCTGGCAGTAAAAGGGTTACTGCGGCCGCTGGACAAATCCCCCCCCATTGTGACTGGCCTACGTTGCCTGAAATTTGACCCCCCTCACTTCACCCTGGCTGTGTGTCAGGCTGTCCGGCGCACACGGGACGGCCCCTTCACCCTCCAACACGCCCTGACACGACAGCACTGGACACTGACCCACGTGACACAAGCCGTTGGACTCACTGCCACCACTGTCGCCCACACGCTCCGGGACACGGCAGCGAAACAAGCAGCGGcgggcagagagagagcagaagagAGTAGGAGCAAGAGTGATGCAGTCACAGAACGATGGAGGGATTAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG:

id description
K23497 TRUB2; mitochondrial mRNA pseudouridine synthase TRUB2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020247 True 858 mRNA 0.63 8 13754935 13759675

Neighbor

gene id symbol gene type direction distance location
AMCG00020232 NA coding upstream 18483 13732640 ~ 13736452 (+)
AMCG00020227 NA coding upstream 115007 13625863 ~ 13639928 (+)
AMCG00020228 NA coding upstream 141557 13597969 ~ 13613378 (+)
AMCG00020226 NA coding upstream 159484 13592096 ~ 13595451 (+)
AMCG00020222 clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903 coding upstream 168985 13583281 ~ 13585950 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding downstream 62086 13821761 ~ 13824208 (+)
AMCG00020243 alad,hem2,LOC106563307 coding downstream 79878 13839553 ~ 13846985 (+)
AMCG00020244 NA coding downstream 114106 13873781 ~ 13874299 (+)
AMCG00020246 NA coding downstream 115966 13875641 ~ 13877226 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding downstream 139369 13899044 ~ 13911515 (+)
G61871 LOC100846954 non-coding upstream 3572 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 45439 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 158209 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 403401 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 405789 13348855 ~ 13349146 (+)
G61904 NA non-coding downstream 117636 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 128476 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 375623 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 376745 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 377751 14137426 ~ 14137829 (+)
G61675 NA other upstream 404223 13349677 ~ 13350712 (+)
G61491 NA other upstream 1135118 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1212674 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1339984 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2454903 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 27339 13787014 ~ 13792944 (+)
G61894 NA other downstream 73495 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 103802 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 123150 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 188751 13948426 ~ 13951047 (+)

Expression


Co-expression Network