AMCG00020249


Basic Information

Item Value
gene id AMCG00020249
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13824689 ~ 13834729 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020249
ATGGTGTTGAGCGCTGCAGGCAGCGAAGTGCGGGTCCTCCGCCGGGAGGCCGGCCCGGACAATCCGGGGCCCGGAGCCAGGATGCCGGCCTGGAAGAGGGAGATCCTGGAAAGGAGGAAGGCGAAGAGCGGGGGAGCAGGTGCAGCCGAGCCCAGCCCTGGGAGCGTCCGGACCAACGGCGAGCTGCCGGCGGGCGGAGGGAAGGACAGCGACGGTAAGGACTCTGCCTCCAGCGCCGGCAGGAATTTCTCTGTGACCACGGCCAGCCAGCACTTCGGAACTCGGCGCAGTGGCGGCTCCCCGGATCTGTCACcggtgaaaacaaacaaagagctGAGCCTCCACGCCCCGGCAGCCACCGACACCTGCGGCACGGCCGTGGGGCAGGAGAGCCTTGTCCTGAAGGACAGCCTGGGCCCGCTGGACGAGAACCCCTTCATCAAGCTGGAGAAGGAGCGAAGACGGCGGCAGGACAAGGACAGCGCCACCAGGCCCGTCCAGCACATCCTGGAGCTGTATGGCAACGTGCCGGGGATCAAGACTATCCGGGCCgacaacatcatcatcatcgagTCAGATCCAGACTACTTCCAAGAGCCAGGCGGGGGCAAGGCAGCGGCCGGGCCCCGGCTACAGCAGAACGGCACAGTGAGCAGTTACAGCTCGCTGAGCGACCTGCTGGATCGCCGGGGGAGCAACGTGACAGAGATCCGCGCCAGGGAGGTGGTGATCTACGACTCTGCGCTGAGCCGCAGCGAGGAGAACCTGAGCACGCTGGGCCGGACcgggcaggaggaggagggctgGGAGACGGGACGCGTCAGTCGCATGCTGCAGAAGTTCGACCGCAACTATGGCAAACTGCAGCCCAAGTCCCGCAGCACTGAGAACCTGCTGCTGGAGGTGGAACCCAGCCCGGTCCAGCCCCGCACCCCCCCGCCAGACCCGGTGCCAAAGACACCCACCTCGCCCCCCCCCCTCAGCCCCGAGTGGCCTAGCCCGGCCGCCCCTGTGCTGCCTCCATCCCCTCAGTCTTCCATTGAGACCCCCCCAGACCAGGACAGGGGGACCTCGAGCTCAGTGTCTTCCTACCGCCGGCGCTTTGAGGATGGGGTTCGCATAGGCCCCCACCGGGACCGAGACTATGGGGGTGAGAAGTGGCTGCCCAATGGGGTGGGGGCCCAGCGGGAGAGGCTCCCCTGGGAGAAGGAAGAGGGCATTGCCATGGACATGCCTGCGGCCGCCACAGTGCCCACCGCTCCAGAGCCTGTGGAGAGTGTCCAAGCCGAATCCCCCCCCCAACGCAGTGCCAGCCgagcccctgcccccccccgcAGTGCCAGCATGCCCCCACCCCAGGGGGCTCATTCCCCATCCTTCCAGATCCTGCCCTCTCCGCTGCCCGACCTGTCAGCCCTGCCCCCTGGTGACATCCAGGCGCGTGCCCTCGCCAACCTGCGCCTGCAATCTCGCCACTCCTTCACGGTCATCCCCCGCCGCCCgtcccccgccactgtgccaaccccccctgccacccccccctcccctcagcAGCAGGAGAGGGAGCCAGCAGTGAGGCCAGCCCCGGCTGAACCCCCCCTGCAGCCAGAGCCAGAAGCTCCCCCCACGCCTCCCCCAGAGCCTCGACACCCCCGCAGTCCTCCGACCCCCCCAGCAcagcagctgcccccccccacaccagtGCAGTTCACAGGtccggaggaggaggaggaggcggaggcggAGAAGAACGTGGGTGATGGGGGGAAGCTGCATGAACTGGACAAGCTGCCTGTCACCAACATCGATGACATTGTGACCCTTGAGGAGCCCACCACCGCTGCCCTCCCCGGCCCTcccccccccgccccctatGCTGAGCTGGGCTCCATGCTGAAGAAGCGTTACCCTGCTGTCCAGGACATCCAGGTGATCGGGGGCTACCTGTCTCTTGGCCGGTCCTGCCTGAGGAGTGGCTCCACGCACAAGAAGtgctgGTCCCTGATAACTGCAGTGTGTCTGAGGTGTGTAAACCTGTCCAGTTACACTCCGAAGCACTCTGTGGATTTCAGCACCTGGCAGGAACACAAGTATGAGGAGTCTGCACCCCCAGGGGACTCTTCCTCGCAGCGTACCGAGCTGTCCAGGGAGGAAGTGATGCTGCGGACAAGCACAGTCCAGTTTGACCTGGCCCACCTCCCCACACAGGAGCTCTCGAATTGGGCCATGGTACCTATAACGCCTGAGCCCAGTTAG
>TU77551
CCAGAGGATCTTCATCCCACACCCCTCCTACAGCagctctcccacacacacacccaacagcagcacagACCTGTCCAGTTACACTCCGAAGCACTCTGTGGATTTCAGCACCTGGCAGGAACACAAGTATGAGGAGTCTGCACCCCCAGGGGACTCTTCCTCGCAGCGTACCGAGCTGTCCAGGGAGGAAGTGATGCTCACTCCAGCGGACGACTCCTCTCTGTCGGACTTCAGCAGCGAGCCGGCACTGTATTTCTGACCCACCAGGACCAAGCCGAGCAACACGGGACCAAACAGAACTAGAACCTCACACACACTTCAAACTCGAAACACACTCCAcactcaaaatacacacactccACATGGGACCAACCAGAACCACACAGAACCAGGGAGAGTCCCACAGAAGAGTCTAATCCAGAGAGAGAGTCCGGGTCAGACTGGATTTTAGAACCTGTGAGGAGCAGCTCCGCGGCTCTAACCCACCCTGCCGGAGCAGCTGCGGACAAGCACAGTCCAGTTTGACCTGGCCCACCTCCCCACACAGGAGCTCTCGAATTGGGCCATGGTACCTATAACGCCTGAGCCCAGTTAGCTCACTGTTGCACAATCCATAGCTGGTTCTGATAGCCCAGTGTGGCACGCAAGCCTTGGTATCTGTAGGCATCTGAACAGAACCCAGACCAGCTGCACATGTCCTGACCTgcagaggagagaagaggagatgAGAGGAGTTCAGAGATCAGGACTGCACACACTCCAACAGAgaagagctggagagagagactgagcaTGAAAACAAGATAAATACAGAAGCTGATAATATTGATACTGTTGATGATTAGAATGCCTGCACCCctcttataattattttgtatttatttttattttttatatatttgtctttcgTCCCTTGGTTGCCCTCTGTGATGTTGTcaacccctccctctctcagcccTGTTTTCTGTCTCATGTCTGAGCTGCTACCCCTTCCCCAGCACTGCCAGTCCTGCTCCCATTATAGACCCCCAGTTCTGTTACTCTGCCGGCCCTtagtctctgtctgtctgtctgtctgcattgGGCTCTGGCTCCTCTCCTCTGGACCCTCTCCTCGCCTCTCCTGTTCCCTCACCACGTCCAAGTCTTCCCATGTGATCTGATAATTCTGGGGGAGGGGGCTCTGAAacttatttgtacttttcttttaatttgcactggcttatttgctttgttttgcactcaATGTGAGCCCCCCCTACCCTGTGGAGAGCGAAGAGAGGTGAGACGCTGCTGGGGTCTCAGCTCTGCGTGGGTTGAGCAGCTGGAGGGGTGTAAGCTCTGTGTAGAGGCAGTGGCTCCTTCATGAAAAGAGTCTATGAGCCACAGACCATAAAATGACCAGGTTAATGAAGTCATTGACTGCAGCAGAAATTTTGGATTAAGGGGTCTTtgaaatgacacattttaattgtgattttccCTCTGTGGATcctgctctctcactctctccatcgTGCTCCACCTTTCCCTTCATCTCCCATCGAGGTGATGCGGGCTCCATGTATTGAGTTGCATGGGTATTGCCATGGTTAGAGCTCCACCCACTCCTTTCCTGGGCTCTATCCCGATTCCCCCAGGCCCAGGTGCTCTTTGCAAGGGCACCCTCAGGCTCCTGCACAGTACTGACAGCCAGCTGCCCTGCGTCCCAGCACTGCCTGCAGAGTCGCTGCCGGTCAGCTGCAGCCCAGTGCGATCGGCACAGCTAGCAATCAAAACTGGGGCTTGTGGccgtgagagacagagagtgcgAGAGACTTGCATTGGGGGTCACTTTTAGAAactgagacttttttttttttttatatttcttctgtAATTGTATTCATTGCATCATTTATACCAAGAAAAGATTTTCATAAAAGATTTTGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020249 True 2256 mRNA 0.66 6 13826028 13834729
TU77551 False 1934 lncRNA 0.51 3 13824689 13828265

Neighbor

gene id symbol gene type direction distance location
AMCG00020250 NA coding downstream 4293 13814222 ~ 13820396 (-)
AMCG00020248 NA coding downstream 20368 13800593 ~ 13804321 (-)
AMCG00020253 fbxw5,LOC107595987 coding downstream 27416 13793197 ~ 13797273 (-)
AMCG00020234 NA coding downstream 57506 13760414 ~ 13767183 (-)
AMCG00020239 NA coding downstream 79256 13737734 ~ 13745433 (-)
AMCG00020258 tmem203,LOC106566747 coding upstream 3073 13837802 ~ 13838218 (-)
AMCG00020257 NA coding upstream 13615 13848344 ~ 13849084 (-)
AMCG00020254 NA coding upstream 15601 13850330 ~ 13852469 (-)
AMCG00020251 prpf4,LOC107721635,LOC107743802,LOC107663789,LOC107691731 coding upstream 42553 13877282 ~ 13882189 (-)
AMCG00020261 slc31a1 coding upstream 51655 13886384 ~ 13890531 (-)
G61927 NA non-coding downstream 1149 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 31758 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 73391 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 171310 13578409 ~ 13653379 (-)
G61729 NA non-coding downstream 374627 13447002 ~ 13450062 (-)
G61943 NA non-coding upstream 78443 13913172 ~ 13914166 (-)
G62066 NA non-coding upstream 510568 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 868782 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 1197406 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 1588426 15423155 ~ 15423574 (-)
AMCG00020256 NA other downstream 11686 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 16356 13805020 ~ 13808333 (-)
AMCG00020229 NA other downstream 159097 13664076 ~ 13665592 (-)
AMCG00020230 NA other downstream 227772 13595518 ~ 13596917 (-)
AMCG00020212 NA other downstream 600177 13216996 ~ 13224512 (-)
G62011 NA other upstream 294949 14129678 ~ 14131569 (-)
G62061 NA other upstream 495793 14330522 ~ 14332407 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 2264171 16098900 ~ 16102739 (-)
G62409 NA other upstream 2284260 16118989 ~ 16120153 (-)
G62415 NA other upstream 2418059 16252788 ~ 16255119 (-)

Expression


Co-expression Network