AMCG00020253 (fbxw5,LOC107595987)


Basic Information

Item Value
gene id AMCG00020253
gene name fbxw5,LOC107595987
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13793197 ~ 13797273 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020253
ggacctacacaatattaggcaggtggtcataatgttatggctgattggtgtataattattataataataacaataatttctAAGCAGAAACCCTTTGTAGAGTAAGTTACAATATTTTCAGGCAAGTTTTCACCACTTAAAAAATTTGTTGTTTCTTCTGTTCCCCTCCGTTTCCAAatactgtctctgtgtctgtgtctatgtcTCAGTCTCTCccttttaaatagaaaaaaagctGAATTGCCATAAAAAGGGTACACTtgtcctctctcttcttcactCACCCCCAGGTGCAGTGACAGACAGGATGTCAGGATGGACCCGATACCCCCCCCACTCCCGGACagcctggtcctggagatcctgctgctgctgcccccccGTGCGGTGCTGAGGGCGGGGCAGGTGTGCCGGCAGTGGCTGGCAGTGTCGCGGGACGAGTTCCTGTGGAGGGATCTGTTCTATCGCTACTATCACATCCCCCGCTGCATCCCTCGACACCCAGCGCCTGGCCTCCTGCTCCAAGGACTGCACTGTCAAGGTACGCACAAGGCAGACCCAGCTGTGGCAGTGGACATGGCATTAGTGGTGATATGGCGCAGTGAGCCAGAGATCTCCCTGCTGCACAgctccagtatgcggcagtttAACTGGGGCTATACCCAGTTCTCCCAGTTCAACGCGGATGACACCCTGCTGCTGGTGTCTGGGGTGTACATTGGTCCCCACCACACCTCCTCTGGGGAGATCGCCGTCATCAACCTGGGTTCGTccAACGTGGAGTCTGAGAATGTGAATGTGGTGAAGCGGCTGTTTAAGATCCAAAACCTGAACGCCAGCACTGTGCGCACCGTCATGGTGGCCGACTGCCGACGCCATGACACACCAGACCTGCTGTTGGACTATGGCGCTCAGGCAGCCCAGAACCGGCCCGCTCCGCTCGTCTTCGACCTGGGCGGTGACAGCGGGGAGGAGGACGAGGATGAATATAtggagggggagGGTCTGTGCAGCACGGAGTTGTCTGAGCGGCAGCTGGAGTCAAAGGTGGCCCAATTCCTGGGGAAGAAGCACACACGCACCCCCGCACCCCCGCCCCTCCCTAGCCAGGACCCGGCTGAGCATAAGATCTACCTGCTGTTCACCATGGGCAGCCTGACCTACTCCCCCCACCAGATAGGGATCAAGCGGATCCTGCCAGAGCAGATGACGACGTGCGGTCCGGTGCTGGGTGAGGAGCGTGGGACGGATGAGTTCTTTGACCCGCTGGACCACGTGATAGACATCCACGGACACATCATCGGCATGGGACTGTCTCCCGACCACCgGTACTTGTATGTGAACAGCCGGGCGTGGCCAGCGGGATATGTGATCTCGGACCCAATGTCACCGCCGCCCATTGCAGAGGAGATCGACCTGCACGTGATCGACCTGAAGACGCTGCGGGAGGAGCGGCGCAGCCTGCGGGCCCATCGTGCCTTCACCCCCAACGACGAATGCTTCTTCATCTTTCTGGACGTGAGCCGTGACTATGTGGccagCGGTGCGGAGGACAAGCACGGCTACATCTGGGACCGGCACTACAACATCTGTGTGGCCCGCCTGCAGCATGATGACGTGGTCAACTCCGTGGCCTTCAGCCCAGCCGACCAGGAGCTGCTGCTGACCGCCAGTGACGACGGCACGGTCAAGGTGTGGCGCTCCCCCCGCATGGTCCGGGTAGCCCAGAGTGCCCGGCCACGCCTGCGCAGGCCCCGCATGCCCTGGCTGTACAAGGACACAGTGGCCAGCGCTGACCCTGAAGCCAACACTGACACTAAGTCCAGctagagactgtgtgtgtgggacAGGAAGTTGTGGGGcacgtgtttttatttttttggctgtACTGAGTACACTCCCTATCAGgcagagagtgagtgagagagcgagcgagcgagcatTAAAAAAgggagagtctgtgtgtgtatgaatgtgatgaatgtatgtgtttgtgtgtctgtctatccaTACATGCGTGTGAGAATatcttgtgtgtctgtctgtctgattttgtgtgtgttgctgtctgtctgtcctcccTGTGGACTCTCTAGGCTCTCCCTCCCTGACTGCTTGTCTACCCTGCGCCTGGATTGCTTTcctgttcattttgtattttaaataaaactattcaaaataaa

Function

symbol description
fbxw5 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of centrosome duplication. Predicted to be located in cytoplasm. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human FBXW5 (F-box and WD repeat domain containing 5).

NR:

description
PREDICTED: F-box/WD repeat-containing protein 5

GO:

id name namespace
GO:0044267 cellular protein metabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10263 FBXW5; F-box and WD-40 domain protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020253 True 2183 mRNA 0.56 8 13793197 13797273

Neighbor

gene id symbol gene type direction distance location
AMCG00020234 NA coding downstream 26014 13760414 ~ 13767183 (-)
AMCG00020239 NA coding downstream 47764 13737734 ~ 13745433 (-)
AMCG00020233 NA coding downstream 62713 13723015 ~ 13730484 (-)
AMCG00020238 NA coding downstream 70249 13719430 ~ 13722948 (-)
AMCG00020240 NA coding downstream 78006 13711782 ~ 13715191 (-)
AMCG00020248 NA coding upstream 3320 13800593 ~ 13804321 (-)
AMCG00020250 NA coding upstream 16949 13814222 ~ 13820396 (-)
AMCG00020258 tmem203,LOC106566747 coding upstream 40529 13837802 ~ 13838218 (-)
AMCG00020257 NA coding upstream 51071 13848344 ~ 13849084 (-)
AMCG00020254 NA coding upstream 53057 13850330 ~ 13852469 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 266 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 41899 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 139818 13578409 ~ 13653379 (-)
G61729 NA non-coding downstream 343135 13447002 ~ 13450062 (-)
G61696 NA non-coding downstream 455096 13337016 ~ 13338101 (-)
G61927 NA non-coding upstream 24475 13821748 ~ 13823540 (-)
G61943 NA non-coding upstream 115899 13913172 ~ 13914166 (-)
G62066 NA non-coding upstream 548024 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 906238 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 1234862 15032135 ~ 15034076 (-)
AMCG00020229 NA other downstream 127605 13664076 ~ 13665592 (-)
AMCG00020230 NA other downstream 196280 13595518 ~ 13596917 (-)
AMCG00020212 NA other downstream 568685 13216996 ~ 13224512 (-)
G61589 NA other downstream 794974 12997838 ~ 12998223 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other downstream 1283260 12484369 ~ 12509937 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other upstream 7747 13805020 ~ 13808333 (-)
AMCG00020256 NA other upstream 14140 13811413 ~ 13813003 (-)
AMCG00020249 NA other upstream 27416 13824689 ~ 13834729 (-)
G62011 NA other upstream 332405 14129678 ~ 14131569 (-)
G62061 NA other upstream 533249 14330522 ~ 14332407 (-)

Expression


Co-expression Network