AMCG00020256


Basic Information

Item Value
gene id AMCG00020256
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13811413 ~ 13813003 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020256
ATGCGTGTGCGCTGGGTGACATGGGACGTAAAGGACACGTTGTTGCGCGTGCGCCACTCAGTGGGGGAGCAGTACTGCGGTGTGGCGCGGGAGCTGGGCCTGACCCTCGACCCTGAGGCCGTGGAGGCCGCCTTCCATAGCGCCTACCGTCAGCAGCAGCGCCGGCAGCCCCTGTATGGGGGAGCGGGTGGGGGCTCGGCGCGGACCTGGTGGGGGGAGGTGGTGTGCGGCACGTTCCGCAGCTGTGGGGTGGAGGACGGGGAGCGGCTGCGGTTGCTGGCAGAGCGGTTGTACCAGGGCTTCAGCGGCCCCGCGCACTGGGAGGTGTTCCCGGATGTTACGCGGGCACTGCAGGGCTGTGGGGCGCGGGGTCTGGCGCAGGCCGTGCTGTCCAACTTCGACGGGCGGCTGGAGGATGTGCTGCGCGGCTGTGGCCTGCGGGAGCACTTCCGCTTCGTGCTTACCTCCGAGAGCGCTGGCGCCGCCAAACCCGACTCGCGTGCCTTCCTGCGGTTGCTGGAGCTGGCTGGCCAACCTGCCCCAGGGGAGGTGGCCCATGTCGGGGACAGCTACCAGAATGACTACTTGCCTGCCCGCGCCCTGGGGCTGCATGCCTTCCTACTGCAGCGGGGGTccgaggagggagggggaggattGGAGGTGCCCCCCCACCACCGTCTTCGCTCGCTAGATGAGCTGCTGCCCCGACTGGAGCAGGACCTGGACtga
>TU77540
TGGTTGCAGGGCCGGAGTCTTGTCACTGTCGGACAGCAAGGAGATAAGGATCCGGATCTGAGACGCCGAAACACCTGCAAACGAGTAACTTATCTGGGTGACCttgtgtgtcgtgtgtgtcTCTGATCGAGGTTCTGGGCGAGCCATTAACGAACCGAACTGAACCGGGCCAGCAAAGTGCGCCTGTAAATTGTATCCGGCTGCCACTTGTCCCGGCGAAGACAGACTGCAGGGCAGCGTGTGCCATGCGTGTGCGCTGGGTGACATGGGACGTAAAGGACACGTTGTTGCGCGTGCGCCACTCAGTGGGGGAGCAGTACTGCGGTGTGGCGCGGGAGCTGGGCCTGACCCTCGACCCTGAGGCCGTGGAGGCCGCCTTCCATAGCGCCTACCGTCAGCAGCAGCGCCGGCAGCCC
>TU77542
TGGTTGCAGGGCCGGAGTCTTGTCACTGTCGGACAGCAAGGAGATAAGGATCCGGATCTGAGACGCCGAAACACCTGCAAACGAGTAACTTATCTGGGTGACCttgtgtgtcgtgtgtgtcTCTGATCGAGGTTCTGGGCGAGCCATTAACGAACCGAACTGAACCGGGCCAGCAAAGTGCGCCTGTAAATTGTATCCGGCTGCCACTTGTCCCGGCGAAGACAGACTGCAGGTGGGGCGAAGTGAGGGGACGGTCAgcacataagacagtgtccagtcgagaggaggccattcgccccatcctgctcgtttggtgtccattaataacggagtgatccaaggatcctatccagtctgttctTGAATGTtgccaagttttcagcttcagccacatcgctggcaGTTTGATCCAGATCAGGGCCCGCTGTCTGTCATCTCCCCGAGCTGTGACGGGTGACCAGCCCACGTCTGGCAGCGTGTGCCATGCGTGTGCGCTGGGTGACATGGGACGTAAAGGACACGTTGTTGCGCGTGCGCCACTCAGTGGGGGAGCAGTACTGCGGTGTGGCGCGGGAGCTGGGCCTGACCCTCGACCCTGAGGCCGTGGAGGCCGCCTTCCATAGCGCCTACCGTCAGCAGCAGCGCCGGCAGCCC

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020256 True 729 mRNA 0.70 1 13811413 13812141
TU77540 False 416 lncRNA 0.61 2 13811971 13813003
TU77542 False 654 lncRNA 0.59 2 13811971 13813003

Neighbor

gene id symbol gene type direction distance location
AMCG00020248 NA coding downstream 7092 13800593 ~ 13804321 (-)
AMCG00020253 fbxw5,LOC107595987 coding downstream 14140 13793197 ~ 13797273 (-)
AMCG00020234 NA coding downstream 44230 13760414 ~ 13767183 (-)
AMCG00020239 NA coding downstream 65980 13737734 ~ 13745433 (-)
AMCG00020233 NA coding downstream 80929 13723015 ~ 13730484 (-)
AMCG00020250 NA coding upstream 1219 13814222 ~ 13820396 (-)
AMCG00020258 tmem203,LOC106566747 coding upstream 24799 13837802 ~ 13838218 (-)
AMCG00020257 NA coding upstream 35341 13848344 ~ 13849084 (-)
AMCG00020254 NA coding upstream 37327 13850330 ~ 13852469 (-)
AMCG00020251 prpf4,LOC107721635,LOC107743802,LOC107663789,LOC107691731 coding upstream 64279 13877282 ~ 13882189 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 18482 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 60115 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 158034 13578409 ~ 13653379 (-)
G61729 NA non-coding downstream 361351 13447002 ~ 13450062 (-)
G61696 NA non-coding downstream 473312 13337016 ~ 13338101 (-)
G61927 NA non-coding upstream 8745 13821748 ~ 13823540 (-)
G61943 NA non-coding upstream 100169 13913172 ~ 13914166 (-)
G62066 NA non-coding upstream 532294 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 890508 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 1219132 15032135 ~ 15034076 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 3080 13805020 ~ 13808333 (-)
AMCG00020229 NA other downstream 145821 13664076 ~ 13665592 (-)
AMCG00020230 NA other downstream 214496 13595518 ~ 13596917 (-)
AMCG00020212 NA other downstream 586901 13216996 ~ 13224512 (-)
G61589 NA other downstream 813190 12997838 ~ 12998223 (-)
AMCG00020249 NA other upstream 11686 13824689 ~ 13834729 (-)
G62011 NA other upstream 316675 14129678 ~ 14131569 (-)
G62061 NA other upstream 517519 14330522 ~ 14332407 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 2285897 16098900 ~ 16102739 (-)
G62409 NA other upstream 2305986 16118989 ~ 16120153 (-)

Expression


Co-expression Network