AMCG00020259 (LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469)


Basic Information

Item Value
gene id AMCG00020259
gene name LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13899044 ~ 13911515 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020259
ATGGAGAGCCGAAAGTTGTCGCTGCTCTTCAGGGCGGTCGGGGTGGTGCTGGTTGGTCTGACGGTGGGGCTGGTCTTGGATGTCCGTGAGTTGTCGGATGCGCTGCTGGGAAATGGCTACCCAGATCACTGGAGGAAATCCGGGCTAGCTGGAGCTCCAGCCCGGGCCGCCGCCTGCATCCTTGGCGGGCTGTCGCTGCTGGCCCTGGGCTGGCTGTACCGACTGCTCTTCGCCCCGTTGGAGCTGCTCCGCAAGCCAGAGGAGGTGGGATACGTGGCCGAGGAGGGTCGAACCCGAGCGCAGGCAGCCAACGAGGTGAGGCGTCGGCGTAAGACCGGAGACCTGCCCCCCGTGTACCCCAACGGCTGGTACCGGGTGGTGGACTCCCACCTGCTGGACAGAGGGGACGTGAAGAGCGTCACTGTCCTAGgtGAGCAGGTGGCTGTGTTCCGGGCGCAGGACGGCACGGCCCATGTGGTGGATGCCTACTGCCCCCACCTGGGTGCCAACCTGGCAGTGGGGGGgcgtgtggtgggggggtgcatcGAGTGCCCCTTCCATGGCTGGCAGTTCCGGGGGGAGGACGGGAAGTGTGTGCGCATCCCATACGCTGAGAAAGTGCCTGACTTCGCTCGGATCCGGACCTGGACGAGCTGCGAGGTGAATGGGATGGTGCTGGTCTGGTACCACTGCGACGGTCTGGACCCGGCCTGGAGCCTCCCTGAGATCGAGGAGATCTGTCGGGGGGAGTGGGTGTACCGTGGGCGCACAGAGCACTTCATCAATGCCCACATTGAGGAGATCCCAGAGAACGCGGCTGACATCGCTCACCTGGCTCACCTGCACACACCGGGCATTGTGAGTGGCACAGACCTGCGCTACACCAACAGCAAGACATGGGAGTTCCTGCGGCATGACTGGAAGGTGGATTGGATGCCTGAGCCCGAGCCCAACAGGCACTGCTCCCAGATGCTGGTGAAACATTCACTCACCGTGTTCGGCCGCCGCTGGCCGCTGCTCGACCTGGACGTGGTGGCCAGACAGGTGGGACCTGGTGTGGTGTACCTGACCTTTGACCACAGCTTCCTGGGCCGTGGGGTGATCCTGCAGGGTGTGACCCCCGTGGAGCCGCTGCTGCAGTGCGTCTCTCACAGCATCTTCTACCAGAGCGGCATCCCGCCCATCGTGCCCAAGTTCATCCTGCGGGCCGAGTGCATACAGTTCGAGCGCGATGTGATGATCTGGAATAACAAGAAGTATGTCTCCAAGCCCCTGCTGGTGAAGGAGGACTCTGCCATACAGAGGCACCGGCGCTGGTACAGCCAGTTCTACAGCGAGAACAGCCCCCGCCTGCGCTTCCAGCACGAGTCCCTGGAC

Function

NR:

description
PREDICTED: cholesterol 7-desaturase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K14938 NVD, DAF36; cholesterol 7-desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020259 True 1377 mRNA 0.64 7 13899044 13911515

Neighbor

gene id symbol gene type direction distance location
AMCG00020246 NA coding upstream 21818 13875641 ~ 13877226 (+)
AMCG00020244 NA coding upstream 24745 13873781 ~ 13874299 (+)
AMCG00020243 alad,hem2,LOC106563307 coding upstream 52059 13839553 ~ 13846985 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding upstream 74836 13821761 ~ 13824208 (+)
AMCG00020247 NA coding upstream 139369 13754935 ~ 13759675 (+)
AMCG00020260 LOC106565473,LOC102201489,LOC106563238,LOC102777117 coding downstream 8076 13919591 ~ 13944753 (+)
AMCG00020265 fhod1 coding downstream 42972 13954487 ~ 13956067 (+)
AMCG00020262 LOC108432357 coding downstream 61899 13973414 ~ 13975559 (+)
AMCG00020264 fhod1,LOC107740454,LOC106562854,LOC107553095 coding downstream 76565 13988080 ~ 13995139 (+)
AMCG00020263 NA coding downstream 88712 14000227 ~ 14022327 (+)
G61895 NA non-coding upstream 8616 13888151 ~ 13890428 (+)
G61871 LOC100846954 non-coding upstream 147681 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 189548 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 302318 13595514 ~ 13596726 (+)
G61676 NA non-coding upstream 547510 13351248 ~ 13351534 (+)
G62012 NA non-coding downstream 223783 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 224905 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 225911 14137426 ~ 14137829 (+)
G62039 NA non-coding downstream 330350 14241865 ~ 14288834 (+)
G62062 NA non-coding downstream 433781 14345296 ~ 14401302 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 13928 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 26399 13863477 ~ 13872645 (+)
G61894 NA other upstream 64212 13833170 ~ 13834832 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 106100 13787014 ~ 13792944 (+)
G61675 NA other upstream 548332 13349677 ~ 13350712 (+)
AMCG00020267 NA other downstream 36911 13948426 ~ 13951047 (+)
AMCG00020273 NA other downstream 284269 14195784 ~ 14232268 (+)
AMCG00020281 slc12a4 other downstream 556285 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2671371 16582886 ~ 16604658 (+)
G62632 NA other downstream 2902859 16814374 ~ 16815857 (+)

Expression


Co-expression Network