AMCG00020263


Basic Information

Item Value
gene id AMCG00020263
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14000227 ~ 14022327 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020263
ATGCTCTCCCTCGCAATGTTGTTGGTGGCGGCAGTCAGTGCGGCTGTGCCTGACCTTACTGGGACTGAAGCATCTCTGCCCGACTTGGCTCTCGGTGCCGCCGGCGCTTCTGCTGCATCTGTCGGAGGTCGGCATGGGGACCACTCTCTCACCGGGACTCCTGCATCTGCCGGAGGTCAACATGGGGACCACTCTCTCACCGGGACTCCGGCTTTCCACACAGAAGGCGACACCTTTGACGAACCGACCGAAAAACAAAGCCAGTTTGAAATAGTGAAATGGGAATGGACGTACGTGCAGGGACCGTACCTTATAGTGATCTGGATCATGGTGGCCAGTCTGGCCAAAATACTGTTCCACCTGTCCAACAGCGTGACTCGCCTGGTGCCGGAGAGCTGCCTGCTCATCCTGCTGGGCCTGGGGCTGGGCGGCATCGTGCTGGCCGCCACCAACAAGCCTGAGTACCACCTGCACCCTGAgcattttttcctctttctgctGCCACCCATTGTCCTGGACTCTGGCTATTTCATGCCCAGCCGACTCTTCTTCGACAATCTGGGGGCCATCCTGATGTACGCGGTGGTCGGCACACTGTGGAACTCCTTCGCTACGGGACTCTGCCTCTGGGGCGTCAAGACAGCAGGGCTGATCGATGGCAGCGTGCAGGCCGGGCTGATGGACTTCCTGCTGTTCGGGAGCCTGGTGTCGGCTGTGGACCCAGTGGCCGTGCTGGCGGTGTTCGAGGAGGTGCACGTGAACGAGACACTCTTCATTATCGTGTTCGGGGAGTCTCTGCTGAACGATGCCGTCACCGTGGTTTTGTACAAGGTCTTCAACTCTTTTGTGGAGATGGGAGCAGAAAATGTGCGGCCTGTGGACTATGTGAAAGGAGTTGCCTCCTTTCTGGTGGTGAGTCTCGGAGGCACAGTGATTGGCCTGGTCTTTGCGTTTCTCCTGGCTTTCATCACGCGCTTCACCAAAAGGGTGCGCATCATCGAGCCGCTGTTTGTGTTCCTGCTGGTGTACCTGGCTTACCTGACAGCCGAGATGGTATCGCTGTCCTCCATCCTGGCGATGACGTTCTGTGGGCTGTGCTGTAAGAAGTATGTGGAGGCCAACATCTCTCAGAAGTCACGCACCACTGTAAAGTACACCATGAAAACCCTGGCTGGCATCTCCGAGACCATCATTTTCATCTTCCTTGGCATCTCTGCTGTGGACCGCTCCAAGTGGGCCTGGGACACGGGCCTGGTGCTGTCCACTCTGATCTTCATCTTCGTCTTCAGAGCTGTAGGTGTTATTTTCCAGACATGGGTGTTGAACCAGTTCCGGCTGTCCCCACTGGACAGGATTGACCAGGTGGTGATGTCATATGGTGGGCTGAGAGGAGCGGTGGCCTTTGCGCTGGTTAGTCTGCTCAACAAAACCAAGGTGAAGGCGAAGGACTACTTTGTGGCAACAACCATTATTGTGGTATTCTTCACCGTGATTTTTCAGGGCCTGACCATTAAGCCGCTGGTGAAATGGCTGAAAGTGAAGCGCAGCGACCAGCACAAGCCCACGCTGAATGAGGAGATACATGAGAGGGCCTTCGATCACACCCTGGCTGCAGTGGAGGATATCGCCGGTCTCCATGGTTACCATCACTGGAGAGACAAGTGGGAACACTTTGACAAGCAGTACCTGAGCCAGGTGCTCATGAGGAAATCTGCTTATCGAATCAAAGATGAAATCTGGGACGTGTATCAGAAACTCAACATCCGGGATGCCATCAGCTTTGTGGATCAGGGAGGCCACGTCATGTCGTCTGCCAGGATGTCCCTGCCCTCCATGCCCAGCCGCACGTCCTTCTCTGAGAACTCTGTCACAAACCTGCTGCGTGAGAATGGCAGCGGGGTGTGTCTGGACCTGCAGGTGATTGACACAGTGCGCAGTGTGCGAGACCGCGAGGATACGGCCATGCACCACGTCCTGACTGGGAACCTGTACAAGCCTCGACGCAGGtacCTGGCCCACTACAGTCGGCACTTCCTGGGCGTGGGGCAGCAGGAGCGGCAGGACCGCGAGGTGTTCCAGAGGAACATGCGCCGCCGCCTGGAGTCCTTCAAGTCCACCAAACACCCGGCCTACCAGGGCAAGACCAAGCCCCGGCACAGGAAGGAGCAGCGCACCCAGAGGAAGGCAGGTTCCCACTCGTCCCGACGACCTGAGAGCTCACGGTGCTGTGTGCACAGGTGCACAGAGGCAGCCGATCAGGTTCCTAATGGCAAACCCAGGAGAAACGTCAGCTGGCAGGACACGGCTCCAGTAGTGGTGACAGTGGACTCTGAGGAGGAGGACAATGATAACTctgagacggagagagaggatGAGGGCATCACCTTCGTGGCCAGGGCGGCAGACGAGGTACTGCATGAGGACCAACCCGCAGGAAACCTGGATGTGTGTCCAAGCCCTTTCCTACTCCCACCCTCCCCAACCTGTGCTGAGAAGCAGCTGCCGTGGAAAGGGGACCAAGGCGGTCTGCCGGTGTGCGTCTCCCTGGAGACCACCAAGATCGTGCCTGTTGACCTGCAGGAGGCCTGGAGCCAGAGCATGTCCTCCCAGGAGAGCCTGTCGTCACCCGCCTTGCCACAGCCGCTGTACCCACGCAGGACACCCCTGTCCTGGGCAGAGCAGAGCGGCTCCCCGGTGACCCGACTTGCACAGGCCTGCCGCTTTCAGTTCCCTGAGCGgcatgaggaagaggagggcaGCCGGACGCTGCAGCAGCAGGAGATGCAACCGCTCATGTCAACGGGGAGACCACCTAGGCCGGGACCCCCTCAGGGTGGTGCTGCAGGCAGGTGGCCCTCGTCCTTCACCCGGGCACCGCACAGCTCCCTGCTGAGGAGCCTGGTGCCCCCCCCGCCTGCAGCCAGCCAGCCGCGCAGCAGGAAACCAACCCAGCTGTAGCCACCGCGCCCACGTCACTCGCTAATCCTGGTCAGTGCCCACTGGAGACATCCCCCAGAGATGACACGAATGTAGCATCTTAACACAGAGCAGGAATGCTCTGTTATTCACCGACGCAACTCTGTTACTCATTCGTTCATTCACTTGTTCTGTGAGCAGGGGGGTTGCGTAGTTAATGctcaaaaatatgaatgtgtccTTTCTGTTTCACTGACAGCATACATTAACCACGagtaaattaaactgttttcttttaatatgattatataATGATATGATTATCACActatttcatattgtattttaaaatagccATGAATGTAACCATACATTGGGGAGTAATGGAAGCTTTGAGTGTTTCTGTAGCACAAGATACTGCAAAATCAAGACCGTATTAAGTTCTGTAATTATGACACTATTGCTAAAGCAAAATTAATGTAGGAAATAGACAacgattgttttaaaaatgtgcagagAGTATTTGATTTGATGCAAAGTTAATTGGAATCTAAAATAACTGCAGCAAGGTTCTGCAGATGTAAATGTACAGAGAGTACTGCTGTAACATTCGCTTTTCATCATCGGAGGAGTCTTCAACTGTCACGAATGGAACTCCTGCAGCTGTCCGTCCGTCCAGACCAGTCTTCGCACCTCCGGCACTGATGCCACGATACATATGAAGCCATTGATTTTGTAAAGCGGCCTTTCAGCCATTGCAGTGCCTGACTATCTGTGTTATGGTGCCAATCCTGTTTACAAGATTGTCATTGAAATGATCTTAATTACTTGCGTTTTCcaccaatacaaaacaaagaatacaaaaaaagtaaaagctaGGAGTTCTAACACCATCTACTTGCTTTactccttttcttttaaattcatCATACATGGGACCTGTCCAGCacttgtaaatgtttttgaaagtgtATAAACTTGATAACTGAGAACCATATAGCTAAAGCATGACCtaaaatatgttaatagatacagttgtaaacaaaataaaaaaataaggagTAGTGCAATATTTAAAGGCAGAGTGGTTGTGATGCTCAGTGTCCAAACACAAGGAGAGCCTTTGAAATGTAGAAGGCTCTTCTCCCTCCCGGTGCACAGGTTAGCAGGTTAGCAGGCCAGAGGGCTCGGATAGGCTCCCTCCACCTGTCTCCAGGGGGATTCTCCACATTTATGTGCAAATGTGCCATTTTGTGCAAAGTACCTTTTGTAGTATGAGCCAGTACTGCTGCTGAGCAATCAGGCATGTGTTaattagagagagagtgttttcAGAGCAGGAGGTTTGGACCTCCTCCTGGCACACAGCAGAGACATGACTGTCTATGAATGTGAATTTCAACAGCATTTGTCTGGTGCAGTTTGGTTGAAGATATGGATTTCTATGAATGTATTTCCCTGCATTGCCAGTTTCAGTGCAGTctacattgtgtgtaatttgtattatttttctgaattaGACATTTTATTGAGGCTTGTTTTGCATGCCatacattgtgtaatttccAGTATTCCATCCAGTGGTGTGGtggtaaaaaataatagtagtgTTAATGTAATAAGAAATATTACAGCACTGCTCAAAATATGTAAACTATGATTATGTACAAGTCCctttaatttttattgtttgttgagCTCCTTAGACATGGAGGTGACATTTATGGTCTTTTCTTGCAGGCTTTTGTTATCCTATTGATTGAAAACCATTTTTcactgtaacatttattttgattattttacctttatttattttttaacaaacaccTACTGCTGGTATATGTGGACTTCTATAATTCtcgatttttaattttatttttgtaatttgcccATGTTCAgaattattgtgattttttttattttaaggaatcttttctgtattgttttcattcaaagGGTCTTTGCTTTGTCTATTTGCAGTATAATTCATTCTTATAATAATATGGTTGTGGGTAAAAAGGGAATGCTTCACTTATATTTAACAAATTGtctcatttaatatatattctacaaATATCTAAATACACCTGTAATTACTTCCCTGGATACTTCTTAATTAATGGGGGTTGATTCATGATGTCTGTTTGACCGTTATATTACAGTGATGCTGCAATAGAAGTGGCTCCTCGGGATATACAGTGTATGgtacactgtaaaataataaaaaaaggacttTGCATGTAATATATGTGCATGATGTTGTCCTAGGTAGTGTGTTTGAGTACATCAATTATAACGATGAAGTATTACaaacataatattatttaaacatctaATTATTGTGAGCATCCTGGAGGTTAAAAGTACACTACACCACTGGGTTAATCaaatttatgattttgtttttgtagatcAAATCAATTTTGGCAATAAATATAGTgcatttaatcaatgtaaaGAAACAGTTAATGGATAAGTGGTATATGCTCTATCTGAACTTAAATTAGGTCTAGATTTTTCAGATGGTCTCTTTaaggtatttttatattttgaagtcACAAACGTTTCTTACAATAAAAGTGATCAAAAAGAGGTCTGCGTGTATTTGACATTACTTTAATATtacctttctttttattcttaaGGGTTGCTTGCTTACAATGTGTGTAATGTggaatattgtatttcaaagaTCAGAGCAGAAGAGaaatattttgtacaaaaaaaaataaaaa

Function

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0015299 solute molecular_function

KEGG:

id description
K14723 SLC9A5, NHE5; solute carrier family 9 (sodium/hydrogen exchanger), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020263 True 5651 mRNA 0.48 16 14000227 14022327

Neighbor

gene id symbol gene type direction distance location
AMCG00020264 fhod1,LOC107740454,LOC106562854,LOC107553095 coding upstream 5088 13988080 ~ 13995139 (+)
AMCG00020262 LOC108432357 coding upstream 24668 13973414 ~ 13975559 (+)
AMCG00020265 fhod1 coding upstream 44160 13954487 ~ 13956067 (+)
AMCG00020260 LOC106565473,LOC102201489,LOC106563238,LOC102777117 coding upstream 55474 13919591 ~ 13944753 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding upstream 88712 13899044 ~ 13911515 (+)
AMCG00020266 NA coding downstream 30031 14052358 ~ 14055730 (+)
AMCG00020268 LOC106594058 coding downstream 62806 14085133 ~ 14098649 (+)
AMCG00020271 NA coding downstream 235245 14257572 ~ 14259160 (+)
AMCG00020272 LOC108432371 coding downstream 239655 14261982 ~ 14272204 (+)
AMCG00020277 LOC102693979 coding downstream 272406 14294733 ~ 14302999 (+)
G61904 NA non-coding upstream 69487 13877311 ~ 13930740 (+)
G61895 NA non-coding upstream 109799 13888151 ~ 13890428 (+)
G61871 LOC100846954 non-coding upstream 248864 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 290731 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 403501 13595514 ~ 13596726 (+)
G62012 NA non-coding downstream 112971 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 114093 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 115099 14137426 ~ 14137829 (+)
G62039 NA non-coding downstream 219538 14241865 ~ 14288834 (+)
G62062 NA non-coding downstream 322969 14345296 ~ 14401302 (+)
AMCG00020267 NA other upstream 49180 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 115111 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 127582 13863477 ~ 13872645 (+)
G61894 NA other upstream 165395 13833170 ~ 13834832 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 207283 13787014 ~ 13792944 (+)
AMCG00020273 NA other downstream 173457 14195784 ~ 14232268 (+)
AMCG00020281 slc12a4 other downstream 445473 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2560559 16582886 ~ 16604658 (+)
G62632 NA other downstream 2792047 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3411315 17433642 ~ 17442711 (+)

Expression


Co-expression Network