AMCG00020264 (fhod1,LOC107740454,LOC106562854,LOC107553095)


Basic Information

Item Value
gene id AMCG00020264
gene name fhod1,LOC107740454,LOC106562854,LOC107553095
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13988080 ~ 13995139 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020264
ATGGGCTTTAGTTTCCTTATGGAGGTTTATATTATAGAAGCAAatgtacttttttccccctttgcttCAGGTGGCAGCACCCAGCGTCAGAGCAACCTGGAGCAGCACAGCACCCTCTCCAGTGACAGGAAGTTCATGCTGGACATCCTGTACTCCAAACACAACGCCGACCCTATGAGGACTCCTGGCAGAGAGGCCAAGAGCAGCGAGAGTGAAGAGGAGGACAGGGAGGAGGACAGTCCCACGGAGGGCGGGCCCCTGCCCCCTGGCGTAGACAGTCTGGCCAGCCGAATCTCTGGGCTGGAGCGGAGGCCGCGGTGTGCAGAAGACGACGGCCGCAAGGGCGAGCTGGAGGGGCTGGGGGCCGGCGCACGGGCGTCCAGGGAGCGGCTGGCAGAGGAGCGGCTGGCTGAGGAGCAGCAGCCCAAGAAGTTGCGGGCTCAGTACAGCATCGACGCCGAGCTGCACTCCAGGAGCCTGGAGAAGACTCTGATGACTCCGCTGGCCAGGGGTGAGGGGGCATGGGAGCGGCCGCAGCCCAGCTCCAGGGCACTCCGGATCAAAGACCTGGACTTCTCTGacctgctggaggaggaggacatTGACGTGCTGGACATGGACAGCTTTGACACCCACCTGCCCAACGGCACTGCACCGCCTCCACCCCCCCTGCCCAGTGGCCCTGgggcccccccgcccccaccccccctgcccAGTGGATATGGTACCctcccacctccacctccccctccacctcccccgGGGGATCCTGGCATGTGCCCtccgcccccgcccccgccaCCCCCTCCCGGACTGCCGCCACCCCCACCTCAGCCAGTAGAATCTGCCTTTGCCAAGAAGAGGAAAACTGTGAAGCTGTTCTGGAAGGAGCTCAAGCAGCCAGACAGCCCCAGGAAGTGCAAGTTTGGCCGTGGCACTGTGTGGGCCTCCTTGGACAAAGTGACTGTGGACACGGCCAAGCTGGAGCACCTATTTGAGTCTAAAGCCAAAGAACTCCCAGCTGCAAAGAAAGGACCTGAAGGGAAAAAGTCGGAGATCCTAGTGCTGGATCCTAAGAGAAGTAATGCAATTAACATCGGGATGACAGTGCTGCCCCCAATACACATCATTAAGACTGCTATTCTCAACTTTGACGAATTTGCAATAAACAAGGAAGGCATCGAGAAAATCCTGACGATGACGCCCACCGAGGAGGAGAAACAGAAGATCCAGGAGGCACAATTGCACAATCCGGACCTTCCACTGGGGACGGCCGAACAGTTCCTGCTCACACTGTCTTCGGTCAGTGGGCTGACTGCCAGGCTGCAGCTCTGGGCCTTCAAGCTGAACTATGAAGCCCTGGAGAAGgAGATTGCAGAGCCGCTGTTTGATCTGAAACTCGGCATGGAGCAGCTGGCtaagaacaaaacattcaaaCGAATCCTAGCAACACTGCTGGCCATTGGGAACTTCCTTAACAGTTCCAGCGCAAAGGGTTTTGAGCTGAATTACCTGGAGAAGGTGACGGAAGTGAAAGACACCGTGCACAGGCAGTCCCTCCTGCACCACACCTGTAACTTTGTGGTGGAGAATCACCCAGACACCTCTGATGTGTACTCTGAAATTCCAGCCATCACACGTTCTGCTAAAGTGGATTTCGATCAGCTGTCAGAGAATCTGGTGCAGCTGGAGAGGAAGTGCAAGGCATCATGGGATAACCTGAAGGTCATCGCCAAACACGAGACGAAGCTACTGCTGAAGAACAAGATGACAGAGTTCCTGAAGGACTGCACAGAGAGGATCATCATCCTGAAAGTCGTGCACAGGCGCATCATCAACAGGTTTCACTCGTTCCTGTTGTACCTGGGGCAGCCCTCCTACTCTGTGCGGGAAATGAAGGTCACGCAGTTCTGCAGGATCATCAGTGAGTTTGCGCTGGAGTACCGAACCACCAGGGACCGGGTGCTGCAGCAGAAACTTAAGCGAGCTGCCCATCGTGAGAGGACCAAAACGCGTGGCAAGATGATCACTGAGACGGAGAAGTTCTCAGGTGCAGCCAACCTTCCACCGGACAGTGTTGCTCCCGTGTCCGTGGCAGCAGAGCCAGAACATGCAGACGAGGACCACGAGAACATGAAGAACCTGCTGGTGACCAGCAGCAACAGTGACAACAGCGGCGTGCGGCGGAGCCGAGCTGGGCGCAGTTTAGGGAGGGTAAGCCCATCCCCCGTGGTGTCGGCGAAGGAGGACAGTGCGAGTTCCCAGGATGATCCAACTGATGAAATCATGGATCGCTTAGTCAAGTCTGTTACGCAAAACCCCAACGAAAGGCCTGCAACTCCGAAAACACGCAGACGTTCGCGAGCCAACAGGAAGTCCTtaCGGAGGACCCTGAAGAGTGGGCTGACCCCGGACCTAGTACAGGCCCTGGGGTTCAGCAAAACTAATGAGGAGCTGTGACCTGTGCTGCCCAGAGGACACAGCTCGCCAGACGCACAGCCGGGCTCGGACCCAGACACGCCGTGCAGAGCAGAATGAAATGCGATCAGATACTGAGCAGTCTCAGGGGACTGAGCTTTGGAGGACTTCAAGTGCTGTACAGAACCTGCCAGGAGCATGATGGGAAAACGGCATGGGCATAAGACAGAAGTATTTTTAGGTGCTAAAACTGtatcattaaaaacagaaagtgagCTTTTTTCTGTCACTTGCCAAATTGCATCTAAACATTGTATGTAACAAGCACAAGATATGCCTTAAGCCATCgatattttgaataattataaattTGGTGTTATAATTGGAGgtaattgtttactgtatatgtaatttaaaaacaccttAGTTACTAAGCTACTTTgtaagtaatacattttctgaatatttgtataaatctACAAATTTGTTTAAGGATGTATACTGAACTCATCTATTTCTATGTTTTTTCATACTGCTGGTATTAAATAGACATAGTTCTCAGGAACCTGGTTCAGTTACTGGGATTATTAAACCTCTGTTAAACAGACTGTCTTTTTTACAGTATAACCAGTTTCATACTACTTACAGTAAGATTCAGTATGTCAGGTTGATCTTCTGACTCGCTTCACACTGATCTTGAAGGAGAGCCCATAAACCAGATCATCTTTAGAcgtttcaatgtatttttttccactatGTTTGtcctttcaaaaaaaaaaaaatatatatatgtttcacaATCTTACAGTTTGGTGTTCTGTCATCTCCTGAATGATATTTGAATTcacaatttattaaataatctaGTTTCCTCACTTTGAGGGGTTGCTGTATTCTCACAGAACATCAGCAGGAGGTGAGGTTGTGGGATAAGAGGGAGATACAGCCTTTCTCCACCAGTACCTATGGGACAGACACCTTCAATGGAAACTAGTAGTCTAAAGTTGGTTAATCTGATCAAATTTCGAAAGCGTTTTTTAACACTAGTCAGTTGAACCCACGGCGACCCTGGGTCGAAATTCAAGcgctttcacattgtcattttcaacaGAGACAAAACTGAAGCCAGGTGAATTCGCCCCTGCTAAAGACTGAGGATGAGATTTCCAACCCAGGACAAAGCACTCACCCTGGGTTGGAAAATGTTAATGTGAATCATAACCCATGTATTGTAGAGCAAGGCAAAATGTCCACTCAACCTGGGATTAGATGGTGTAGTGTGAAAATGGGATGAATTGTGGAATGCAGAATGAGTGGATAGTTATATTGGACTGAAAGCAATAGTTAGTTTGCTGTTTAAAACTGCTTCAACCAAGGAACTGCATAAATGTGCAAAATGCTGAGGGCATGGGTTTAATATATTCAAAGCACACACATTGTGAATGAATCAGTATAAACAGCCATATTGTGGATCTCTTTGCACTAGGATTCTTAAGCATACTAATATTAGGTTGTCATGTTATTCTCATAATGTGTATACCAAACTCCAATATACAgttgttccttttgtttttaatgcatctgTAATTGACTTTTCAATTAGACTGTTCAAATGTAAACACACTGTGTTGGAGGCATTTGATCAGaagtattgtttgtatttcacatattttgtaatattgtaaccaattaaaaatatatttgtttttaa

Function

symbol description
fhod1 Predicted to act upstream of or within regulation of stress fiber assembly. Orthologous to human FHOD1 (formin homology 2 domain containing 1).

NR:

description
PREDICTED: FH1/FH2 domain-containing protein 1

GO: NA

KEGG:

id description
K23939 FHOD3, FHOS2; FH1/FH2 domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020264 True 4129 mRNA 0.49 10 13988080 13995139

Neighbor

gene id symbol gene type direction distance location
AMCG00020262 LOC108432357 coding upstream 12521 13973414 ~ 13975559 (+)
AMCG00020265 fhod1 coding upstream 32013 13954487 ~ 13956067 (+)
AMCG00020260 LOC106565473,LOC102201489,LOC106563238,LOC102777117 coding upstream 43327 13919591 ~ 13944753 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding upstream 76565 13899044 ~ 13911515 (+)
AMCG00020246 NA coding upstream 110854 13875641 ~ 13877226 (+)
AMCG00020263 NA coding downstream 5088 14000227 ~ 14022327 (+)
AMCG00020266 NA coding downstream 57219 14052358 ~ 14055730 (+)
AMCG00020268 LOC106594058 coding downstream 89994 14085133 ~ 14098649 (+)
AMCG00020271 NA coding downstream 262433 14257572 ~ 14259160 (+)
AMCG00020272 LOC108432371 coding downstream 266843 14261982 ~ 14272204 (+)
G61904 NA non-coding upstream 57340 13877311 ~ 13930740 (+)
G61895 NA non-coding upstream 97652 13888151 ~ 13890428 (+)
G61871 LOC100846954 non-coding upstream 236717 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 278584 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 391354 13595514 ~ 13596726 (+)
G62012 NA non-coding downstream 140159 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 141281 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 142287 14137426 ~ 14137829 (+)
G62039 NA non-coding downstream 246726 14241865 ~ 14288834 (+)
G62062 NA non-coding downstream 350157 14345296 ~ 14401302 (+)
AMCG00020267 NA other upstream 37033 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 102964 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 115435 13863477 ~ 13872645 (+)
G61894 NA other upstream 153248 13833170 ~ 13834832 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 195136 13787014 ~ 13792944 (+)
AMCG00020273 NA other downstream 200645 14195784 ~ 14232268 (+)
AMCG00020281 slc12a4 other downstream 472661 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2587747 16582886 ~ 16604658 (+)
G62632 NA other downstream 2819235 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3438503 17433642 ~ 17442711 (+)

Expression


Co-expression Network