AMCG00020267


Basic Information

Item Value
gene id AMCG00020267
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13948426 ~ 13951047 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020267
ATGGATGAGTGTGAGAAGTGTGTTCCCAGGAGAGATCCGGAGCACACAGGCTCTCCCCGGGTCCAATGTGCCGGGATCTGGGTGAAGAGGTTCCTGCAGTCACTCCACGGGAAGCGGAGCCAGGACTCTGAGGTGGGGCAGGCTGATCCCACAGTGACCTCGGTGCTTTCCTGGCAGCACTTCCTCTTAGCGCTTCTCATCCTGCTGGCGCTGGGCGTGATGGTGCTGATCCTCTTCTGGAATTACCAGTGCATCGTGGTCCAGCGGCTGTGTCAGGCTCAGGAGGAGCGCTCCCCGTTCCCTGTGTTCGGGAAAACGCAGAGCTCAGAGCAGAGCGATTAG
>TU77582
GCTCCACAGCacctcacacacagagacaacatCTGCACAGCTGCGGGTCCGAGGACAGCCAGACAGAGagctgttaATTGAGAGTGCTGCACGTACTTCCCTGCCTGACTGGACATGGATGAGTGTGAGAAGTGTGTTCCCAGGAGAGATCCGGAGCACACAGGCTCTCCCCGGGTCCAATGTGCCGGGATCTGGGTGAAGAGGTTCCTGCAGTCACTCCACGGGAAGCGGAGCCAGGACTCTGAGGTGGGGCAGGCTGATCCCACAGTGACCTCGGTGCTTTCCTGGCAGCACTTCCTCTTAGCGCTTCTCATCCTGCTGGCGCTGGGCGTGATGGTGCTGATCCTCTTCTGGAATTACCAGTGCATCGTGGTCCAGCGGCTGTGTCAGGCTCAGGAGGAGCGCTCCCCGTTCCCTGTGTTCGGGAAAACGCAGAGCTCAGAGCAGAGCGATTAGGCCGAGCGATGGCCACAACAGACTGAGTGCGGAGAGCAGAACTGTGTTCAACGGCCCTGGGCTGAGCACAGATTCGAAAGCACTGATACCATGCATTTTCATTAAACCAGAACTGAAACGACACATTTTCCCTAATCATGCCTTCCCGGTTGAACAGCCACGGTGAATGTATCCGGGAGTGAAAATCCCAATCCTTCTGGGTTCTCCTGTGGCTTTAGTGCAGCTGTAACTGATTCTAAGTTTGATTGTATGAAAAGCTAATCATGGTAGCTTTGCTTTAAAGCACTATGTTAAGTATAATGGTACAATTccattattgttacattttattctcacaggaaaggaaaaatgtTTGATAGCATAAGGAAAGTATACACTTCTTATATGGTACCACTAGTGGATAAACTAATAATGTCCTAtgatgtatatacagtatgtagtATTAAGTGtctatgttaaatgtataaaaggtgTTCAAACAGGTTAGTTTCAGTCTTCTGAACACATGAGTTTATTTTCTGCCCTGCGAATCTctgcatttaaaactttttcatGTGTATATTACTCTGGTGTGCAGTAAAGATTGTTTTCTGCTCTTATGGCAGAATTGTTCAACACATTTTCCTTCTGCTCTGCTTATTGATTCTATGAGGTGTGACCGTTATTCCAGTTAAATGCACAGTTGGGAGTGATGTGCCATCTTTATAAACCAACTAAAGCATACCCGTCTGTCTTAATATAAAACCCTCTCACACTGGAGAAAGAAGGGAGGAGATAGAGGACGTACCTGTAACACCCCAACATCACACATCCCTGTTTACAGCTAATCTAACCCTTCCCTGCCTTCTCTCTCAGGGAGGTCTCAGTGCTGCACAGTGCCCAAGCTCAGCACCATCTACAACTCTCCCCTATCCCTAGCCCTCATACCCCAGGCCTGTCAGAGTTGGGTGCAACTGTGCCCTCACAGTTGTCCCCAATCTCCCAAGACCAGGCTGCCAAGTATGTTTCACCTTCCCCTCAGGGTGGCAGCACTTGATGTTGTCCCAGAGAGGggaatcatgttt

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020267 False 342 mRNA 0.60 1 13949642 13949983
TU77582 True 1520 TUCP 0.48 2 13948426 13951047

Neighbor

gene id symbol gene type direction distance location
AMCG00020260 LOC106565473,LOC102201489,LOC106563238,LOC102777117 coding upstream 3673 13919591 ~ 13944753 (+)
AMCG00020259 LOC107754619,LOC107665231,LOC107662064,LOC108279335,LOC105902521,LOC108435469 coding upstream 36911 13899044 ~ 13911515 (+)
AMCG00020246 NA coding upstream 71200 13875641 ~ 13877226 (+)
AMCG00020244 NA coding upstream 74127 13873781 ~ 13874299 (+)
AMCG00020243 alad,hem2,LOC106563307 coding upstream 101441 13839553 ~ 13846985 (+)
AMCG00020265 fhod1 coding downstream 3440 13954487 ~ 13956067 (+)
AMCG00020262 LOC108432357 coding downstream 22367 13973414 ~ 13975559 (+)
AMCG00020264 fhod1,LOC107740454,LOC106562854,LOC107553095 coding downstream 37033 13988080 ~ 13995139 (+)
AMCG00020263 NA coding downstream 49180 14000227 ~ 14022327 (+)
AMCG00020266 NA coding downstream 101311 14052358 ~ 14055730 (+)
G61904 NA non-coding upstream 17686 13877311 ~ 13930740 (+)
G61895 NA non-coding upstream 57998 13888151 ~ 13890428 (+)
G61871 LOC100846954 non-coding upstream 197063 13751087 ~ 13751363 (+)
G61841 NA non-coding upstream 238930 13708835 ~ 13709496 (+)
G61774 NA non-coding upstream 351700 13595514 ~ 13596726 (+)
G62012 NA non-coding downstream 184251 14135298 ~ 14136287 (+)
G62013 NA non-coding downstream 185373 14136420 ~ 14136936 (+)
G62014 NA non-coding downstream 186379 14137426 ~ 14137829 (+)
G62039 NA non-coding downstream 290818 14241865 ~ 14288834 (+)
G62062 NA non-coding downstream 394249 14345296 ~ 14401302 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 63310 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 75781 13863477 ~ 13872645 (+)
G61894 NA other upstream 113594 13833170 ~ 13834832 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 155482 13787014 ~ 13792944 (+)
G61675 NA other upstream 597714 13349677 ~ 13350712 (+)
AMCG00020273 NA other downstream 244737 14195784 ~ 14232268 (+)
AMCG00020281 slc12a4 other downstream 516753 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2631839 16582886 ~ 16604658 (+)
G62632 NA other downstream 2863327 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3482595 17433642 ~ 17442711 (+)

Expression


Co-expression Network