AMCG00020269


Basic Information

Item Value
gene id AMCG00020269
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14148574 ~ 14169641 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020269
CGACAGGGCCGCGGATGGGAGCTGCAGTCTGAGGCCGGACGCGGCGGAGGCGCGGGCTGCGTGATGAGAGGGGAACCAGTGTGTCTTTGACATGTGTGTCTGCGGGAGTCGAAAGGACGCACCGGAGACAGGGGAGCCCTGAGCGTTTCATCTCGTATAATCGGAGTTTGATTTCGGATTTTATtgagcagcaacaacaacaacgcaGGCGCCGCGTCCTTTGGGAGGCTGagatattaataaacaacacGCCGATGTTTTTCCGAGACTGCTGTGTTGTCCGAGCAGATTATTTATCAAACGTACACATCTGAttggtttttaatatatagccTGCATAGCCAGTATATCCACGAAGAGGAAATGCAGTTGCATTGTTGTGGTCTTAGTAACTAGGGACGCCCTGTTTAATTCAGTCACAACAGTAAGTGTGTGCCGCCCGCATCCGCCACGACCGCCAAGCAAGAGGAGAGACATCGTTTTACTAACATTTTCTCCGTGGGCACATTGGCTGGGGTTCACCGGGATGAGTTAAGATTCACTGTGTGTTATGAAAAGACGTCCAATGTcatgatttaaaacataataataacgcAATAAAATATACCTCTTATATAGCAACTAGGACAGCATTTAGGATGCTGAGAGGTCTTCAGTGTTTGTCGTGGACAGCCCGCCCCCCGGCCCGGCTCAGAGAGCATGCTTTCCTAGGCTAGGACATGCAGAAGACAGGCTCTTTTGAAAAGTTAAGGGAGATCAGCGGTAGTTAAGGGCAGCGGAGTGGACCGGGACAGAGACGGGGTGGATGTGAGGAAGAAAGGACTCGGGCAGTGGAAAGAGCAGAGGTCGGTTCTGGTCGGTGTGCCTCTGAGATGTCTTGGACCGGGATGCGCTTTCTGCCCACACCTCCGCCAATACAGCACCCAGCGCATTGAAAGATGAATGTCTGCAACAAGAACCCCAACCGCACGGCCCCCGAGAAGGAGGATGGCCCCTCACGGCCGGAGCTCCCCCAGTGCTCACGCACCAACGGCTGGAGTtggcccccccaccccttccagCTGCTGGCCTGGCTGCTCTACCTCTACTTCGCCGTCATTGGCTTCGGCATCTTTGTCCCCCTGCTGCCTTCGCACTGGATCCCTGCCGGCTATATTTGTACTGGCgtgatgtttgtttgtcatcTCTGTGTCCATCTGACGGCCGTCTCCATTGACCCCGCTGATCGCAACGTTCGAGCGAAGAGCTACCGAGGCCCCGTGCCAGCCTTTGATCGCAGCAAGCACGCCCACGTCATCGAGAACTGCCACTGCTACCTCTGTGAGGTGGATGTGAGTCCTAAATCCAAGCACTGCAGTGCCTGTAACAAGTGTGTTGCCAGTTTCGATCATCACTGTAGATGGCTGAACAACTGCGTGGGCAGCAGGAATTATTGGCTGTTCCTGAACAGTGTGATCTCCGCTCTGCTCGGGATCTGCCTGGTTGTCATCATCGCCTTCTATGTGTTCATCGAGTTTTTCCTGGATCCGTCTCAGCTCCGCTCTGACAAACACTTTCAAGTGCGCAACGAGTCGGTGGTGTGGTTCGTGTTCCTGCCTGTGGCCCCGGTGTCCACCACCGGCCCTGCCATCCCTGCCCTGGCAGCGGTCACCATCGCCCTGGGGCTGCTGTCCATCGTGCTGCTTGGACACCTGCTCTGCTTCCACATCTACCTTATGTGGAACAGGCTCAGTACATACGAGTACATCGTCCGCCAACGCCACCGGCAGGAGGCCAGGGACTCTGACAGAGAGCAGCAGGGGAATGAGTCTGTGCCTCCGAAAATGAAGCCCATCAAGGACGTGGGTTACTCAGGGACACTGGGATACACCAATCCTGAGATTGAAGTGGAAGATCCTGCAACAATGCTCTCCACAGGAAAAGAtTTCTCACTGGTTGTTGTCTGTGGGCAATGCAGGTTCTACGGGAATGGTGTTCTGAGCTCTGGCAGCAGGAGGGTGGAGGAGGACCTTGTTCCCACCATGTCCACCGAGCCACAGTTGCCCACCcggccacacagacacacacagaagaagaaaaagaaagtgcacAAAGTACCAGCAGAAGTGACCAATGACCGATCCCTGGAACACAGTGCCAGCAAGATGCCAGCAGTGCCCCCATCAGAGCCGGACCACTGTGTTGGTGCTGCTACTATGGTTGCCTCCCTGAGTCAGCGGCTCCCCTTCCCAGCATTTCCCCTGCGTATGGCGCTGCCCCCCCTGGCACCGGTGCAGGCGGCTGGCCTCCCTGCTGAGTATCACTCTGACTCCGCAGAGTCCCTGGAGGAGATCCCCGTGGCCCAGGCTCGGCTGGGCAGTGCAGCCATGGCCGGCTATAGCGCCCGCAGAGACACTGGGGCCGCCTCCTCGGCTCAGCCACCAGCCCCTGGCCAtctgctgcagcccctgccCTCCCCGTTGCCCAGGACCAAGAGGAGGGGATCCCGCCGGACTCCGACTGAAGAGCAGAGGTTCGAGCTGCAGCCCCAACCACCCAGCGTGTTCGTGAGCAGGAGCAGTGGCGTGCCTGACCTGGGAAGAGGCCCAGAGGCCCCTGACACTGCGGGGAAACTGAAGCGCAGCAGCAGGAGAGGCCCCAGCGATTCCAGCCCCAGGACGCTGCCTTAGCATGGCCTGCCGGACCCAGCTCTGTGGCCCTCACTTCCCACGCACCCACCTGTGCCCCTGGGTAGCAGCCCCCCCTCACACAGCAGCTGGGCTGTCAGGAAACTTCAGAGAGTTCAGCTATAACACTCTTCCCCAGATGCAGAACTCGCTCTGTCTGCAGCAGCCTATGCAAACACTGAGAAACTGGGCGGGTGTTGGAGTGAATCTCTGAACGACACTGTGGACTACGTGTTTCTCCAGGTGAAAGGAATCTCATCAGCTCTACGTTCTTCCGTATGGCAGCATGCTGCTGAAACACTAATTCAGCCACTGATACAGTGACCTGACTTTTAATTTGGTTGTCTTACTCTTTTCCTTACTGTATCTTTAACCTGCCATAGTAGCATATTACCAAGACAATATTTTTCctagtaaatattttatttaattatgtacttttttatgatttatttatatgcgTCCAATGCCAAAGGTTATATACTGTGTGGAAACTTACGATTCttgatttatatgaaatattcatattcagcTCAGTTCAGAAGGGTAGTGTCTCCTGCAATACAAAACAAGTTACCTGAAAccttaatttaatcattttgagtgtgtgtgtgtttttctctagCAATCTATGAAAATTACTTTCTAAAGGGGCTGTGCCCTAAAATAGCTCTGTGCGGATGCTCTGTCCCTGCAGTCTTGTAGCGGCCGGTGGGTGTGTGCTGTGGGTGTGGTAGGCAGTGCCCTCTGACAACTGACACACAGCTCACGGGACACTACTTCCCAGTGCTGCTGTACTATCTGTGTCTCTTGCTGCacagactattattattaatatatgcgGCTGACACTTTTATCTACAGTAAATTACCTATATTAGATCATTAGGACATTGTAAGAAAGTGAAGAAGCTaactttgtttgcttgtttgttttagccCATGCCTGTTTGTGATATTGTGACCTTCCAGTGGTCTGAGTATAGACACTATAGTATAGGGACTATATCAAGCTTTGGCCTGTTTGTGTAGCAGAACTTCTACCTCTCTGGTCCAGTCCGCACatctggggccggttgcataaacatagactaagtctttgccatagtataattataaatcatactaatgatagacactcagttaaaaccgttgcataaaacagtctttacttagactggtcttagtcaataatgcaatgcattctgggtatTTTAAGACCATTTTTAGGACAGACAAAAACATGGCGGACGCTCTCTAAAACAGTAACGATCCCAGTTATCTTAAAATCTGTTAGTTATTTAACTATACTAtagaaaaattatataattttgggGATATTTTCTGAATCTTCTGAAACGCATTCAAACGCAAGGTGTGGGATAACATCACTAAAAAGACAACAGCGACAATccgcattgtgtgtgtgttagaagaatatgctaatttaagaggaaacatcagTGTACTGGAGGAGGACCTCTCTAAAACTAAAACGCAGTacagagttattattatttatttattggcagatgcccttatccagagtgacttacaggatacaagagcaaaacaaaagtgcaaaaatacagtacaaaatttcaaatcaggcataatacatattacagtttcaaaattaCTAAAGTGGATAGGTAAAATGTAGCCTACAGCTGGTGATTGAAATCTTTGGGGAGGAGTCTCGATGCTGGGGGATTGCTGGTGGGTGGGAGAGCGGAGTGTGTGAGAGCCAGTGATTTCAAGGGGAAGATCAACTTAAATTCTAAGTTAGCCTAGGGGTGAGGAGGCTACCTTAAGTcttaatcttattttttatgcaaataACTAACTTGCATTAGACTACTCTGTCAAATTAAGTTGCATAAAAtttagttttatgcaaccgggCCCTGCTCTCATTCTGCGCTCACAGGCTGCAGCTGGAAAGTCTTTTCAGAGCAGTTGGTTTCTTTgcttggtttctttttaaaattatttttatgaaacacaagttttctgtgtgtataaTGCATAATTCCAGAGGATTGAGATATGGACAGGTGTGTGTCTGACCTTGTTACAGTAAGCAGAAAAACCTGAAGGCCAAGTGACTGGTATTGAAATTACTGTGTGAATACTTTTGGGAAAAAGGATTTGGAGATTCATGGAATAcatgtgcttttatttgttaaaatatcttGTTGGTGCAGTTGCAGGTAGATATTTTGTATGAAATCCCTTCAGTTCATGTtcattttggtttccatttggGAAAGAGAGCTAAACGAGGTGAGCGAACTGTTATTAATATGCGgtgctttgttctgttttggcGATCTTTCCCAGTTCATCTGCGAGCCACATAGCATCATGGGAGCAGAGTGTGTTACCATGACAAAGAAACATCAGGACATCACAACTCCCTGTGTCAGGAAGGCCACGCAGAGATCGAGAGAGCTGCAGCTCTCTAAGGACATTGTAACAGAGCTTTTCGTAACAGACTCAAAGATTTCCATAAAAGTCCTGTTCAGATACTGTCAAGTTGACAAGCATCTGGATTGATTGCCCAAATGAAAGGTCTAGATAGTGCTGAGTCAGGTCACATCATTCAGCTCTTAAATgaggaaattgtttttttgtttttgttgttttattgactCACAAATTCAGGAACTAAAATCATAAAGAAGTTTTTAAACCTTGAAAACCCACACATTGAAAATActcctgtacacacacacacacactcactcacatttTTAATGCCATTTATCCCTGACAGTCATATCCAGGGggtgattttaatgttttgtaatttgtgttttacagtagACACCTGTATTTTAACCTACATTTTATAACTATacagactttttaaaaataaaactagaataTTTGTAACagcgtttttatttttatctgagttctggagagaaaaaaaagctgtatAAAGTGTCTTTATCTTCTGTGATCCAGCCTGCTATCTGCAATAGTTCAATGTGTCTGTCTGAgtgtaaattaacatttagccCTGAAAAATCTGCATCAAATCACAAgggatttttttgtgttttcctggtgtttgcaaaaaacaatacatttattaaaactgaGGGATTTTTTGGCTTTCAGGTGGGCATTTCAttagtgtgtctgttttgtttaacagtGCCTGTTGAGATCACTGCTGCCAGCCACTTGTACActaactatttaaaaacagaccaaCGACTGAATAAAAAGCCAGGGGGTGCAGTGCATTCATTATGTAATGAGGCAGTGAGGGATGGACGCCATCCCAGCATGGGAGTTAAGTCACTGACTTGCCTCCTCTGGCCTCTCTCTGCGGTGCTGTTCTGTCGGCTCTGGGTTGTTGACAATGGGGCGGTTGCAGAAAGGAAGCTGAGACTTCATTGcgtgtttttaaattgtatgtcaGTGGCTTGAACCCTTGATCCCTTGGTCCCTCTGTGCCCTCCCTGTGACCCCCCTGCCTCTGCTTAAACACGCCGTCCTTCCTGTGTGGGGGGCCAGGAGGCTGCTGGTGACGGCAGGGTTTGTCTTTAAGTTTCAGTTATATAATATTCCAACACTATATTTGcactaaatataattaaaatgtttatgtattatttttgtattaaaaaaaaataataataattctgtataTACCCTTC

Function

GO: NA

KEGG:

id description
K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020269 True 6339 mRNA 0.47 11 14148574 14169641

Neighbor

gene id symbol gene type direction distance location
AMCG00020270 tppp3,LOC106588035 coding downstream 2890 14138412 ~ 14145684 (-)
AMCG00020261 slc31a1 coding downstream 258043 13886384 ~ 13890531 (-)
AMCG00020251 prpf4,LOC107721635,LOC107743802,LOC107663789,LOC107691731 coding downstream 266385 13877282 ~ 13882189 (-)
AMCG00020254 NA coding downstream 296105 13850330 ~ 13852469 (-)
AMCG00020257 NA coding downstream 299490 13848344 ~ 13849084 (-)
AMCG00020274 atp6v0d1,LOC106588021,LOC103462946 coding upstream 72224 14241865 ~ 14249749 (-)
AMCG00020278 NA coding upstream 142771 14312412 ~ 14314001 (-)
AMCG00020282 NA coding upstream 236142 14405783 ~ 14427264 (-)
AMCG00020283 NA coding upstream 267155 14436796 ~ 14437815 (-)
AMCG00020284 NA coding upstream 269890 14439531 ~ 14440544 (-)
G61943 NA non-coding downstream 234408 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 325034 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 355643 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 397276 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 495195 13578409 ~ 13653379 (-)
G62066 NA non-coding upstream 175656 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 533870 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 862494 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 1253514 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 2310889 16480530 ~ 16480990 (-)
G62011 NA other downstream 17005 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 313845 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 335571 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 340241 13805020 ~ 13808333 (-)
AMCG00020229 NA other downstream 482982 13664076 ~ 13665592 (-)
G62061 NA other upstream 160881 14330522 ~ 14332407 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1929259 16098900 ~ 16102739 (-)
G62409 NA other upstream 1949348 16118989 ~ 16120153 (-)
G62415 NA other upstream 2083147 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 2102810 16272451 ~ 16275573 (-)

Expression


Co-expression Network