AMCG00020270 (tppp3,LOC106588035)


Basic Information

Item Value
gene id AMCG00020270
gene name tppp3,LOC106588035
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14138412 ~ 14145684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020270
TTGGCTGCTGCTGTGTATTGGTGTGTGCTCCGTGTTCAGCTCAGCCCTACTCCCGGCACAgtggaggagagaagaggagaggccTTGGAAAATATAACAGCACAGCATCCAGCCTCAGCGCCAGCCAGCCGAGCAGAGGAGAGCGTCGAGTGGGTCCTGAGACCGGAGCCTCCAGCCCTCAGACACAGCACAGAGGCCATTGGCACAGCACCCCCACAGGCCAGAGCCGGGCAGAGCTCTGACAAATACACCTGGGACCCACTGGGCAGGAGGCAGCAGtGTAGAGGacgcaggcaggcaggcaggcaggcaggcaggcaggcacagTGTGGACGGCTCGTGCAGCACAGCTGTGGGAGTTACGGAGATAACTGTCTCACCAACTCAAAGCCCAGTCACAATAGCAAAGTTGCACCAGACTACGGCGTTGTCAGGATGGCAGAAAGTGACATGGCAGAACTGCAAGAGTCCTTCAAGAGATTTGCGATTCATGGCGACACAAAGGCCACGGGCAAAGAGATGAACGGCAAGAACTGGGCCAAGCTGTGCAAGGACTGCAAGATCACTGATGGCAAGAACATCACCGGCACTGATGTGGACATTGTCTTCTCCAAAGTGAAAGCGAAGACAGCGCGTGTCATCACCTATGAGGAGTTCCAGAAGGCGCTGGAGGAGTTGGCCTCCAAGAGGTTCAAAGGTCAGAGCAAAGAGGAGGCACTGCAGTCCATCTACAGACTGATCGAAGGCAAGGGGCCGGCCAACGTGGGCGTGACGAAAGTGGCCAAGAAGGGCGCAGTGGACAGGCTGACGGACACGACCAAGTACACCGGGTCCCACAAGGAGCGCTTCGACGAGAGCggcaagggcaagggcaagggcGGGCGTGAGGACCTGGTGGAGCAGACCGGCTACGTGGGTGCCTACAAGAACGCTGGCACCTACGACGAGAAAGCCAAGACCAAGTAGCCCGGCCTCCCTGGGGCCCGGCGGCTGCTCTTCGCCCGCTCAGACATGAGCCGTCTCCACAGTGTTTTTTCAGTCGCCATGGCAGCAGACACAGGGCAGACATCCCCGCGCTGAGCACAGGCCACTCTCACACCACAGGGACACGTCTTAAGAGGATCTTCAGGATGACTTTGCTTTCCCAGGAAGTGTAATGTTCTGTCTCCTTAACAACAAGTCCTTAATGTTCTTCTTAATGCTTTTTAACGCTGGggtattttaatgcatttccttctttctcttacttcttaattacatttttttgtgttttgtttgattcaATTTAGCTTTGCgttatatttttgtaacacaGGTGGTAAGACACCAATTTACTGTATTGGAActggaaattaaattgtaattcaagtaaaagaaaacaaatgcagtgctTTGGCAGTCTTCAAACTAAATGTGGTGCATCTCTTAGACTCCGTTTTATTAATTAGCTTCTTGGCAGGAGTCAAATAACTTCATTGTACTAACTTTAAAACCCTGGAggagagtgggg

Function

symbol description
tppp3 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule bundle formation; microtubule polymerization; and positive regulation of protein polymerization. Predicted to colocalize with microtubule. Is expressed in Kupffer's vesicle; central nervous system; forerunner cell group; neural tube; and pronephric duct. Orthologous to human TPPP3 (tubulin polymerization promoting protein family member 3).

NR:

description
PREDICTED: tubulin polymerization-promoting protein family member 3

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020270 True 1510 mRNA 0.53 6 14138412 14145684

Neighbor

gene id symbol gene type direction distance location
AMCG00020261 slc31a1 coding downstream 247881 13886384 ~ 13890531 (-)
AMCG00020251 prpf4,LOC107721635,LOC107743802,LOC107663789,LOC107691731 coding downstream 256223 13877282 ~ 13882189 (-)
AMCG00020254 NA coding downstream 285943 13850330 ~ 13852469 (-)
AMCG00020257 NA coding downstream 289328 13848344 ~ 13849084 (-)
AMCG00020258 tmem203,LOC106566747 coding downstream 300194 13837802 ~ 13838218 (-)
AMCG00020269 NA coding upstream 2890 14148574 ~ 14169641 (-)
AMCG00020274 atp6v0d1,LOC106588021,LOC103462946 coding upstream 96181 14241865 ~ 14249749 (-)
AMCG00020278 NA coding upstream 166728 14312412 ~ 14314001 (-)
AMCG00020282 NA coding upstream 260099 14405783 ~ 14427264 (-)
AMCG00020283 NA coding upstream 291112 14436796 ~ 14437815 (-)
G61943 NA non-coding downstream 224246 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 314872 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 345481 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 387114 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 485033 13578409 ~ 13653379 (-)
G62066 NA non-coding upstream 199613 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 557827 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 886451 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 1277471 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 2334846 16480530 ~ 16480990 (-)
G62011 NA other downstream 6843 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 303683 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 325409 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 330079 13805020 ~ 13808333 (-)
AMCG00020229 NA other downstream 472820 13664076 ~ 13665592 (-)
G62061 NA other upstream 184838 14330522 ~ 14332407 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1953216 16098900 ~ 16102739 (-)
G62409 NA other upstream 1973305 16118989 ~ 16120153 (-)
G62415 NA other upstream 2107104 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 2126767 16272451 ~ 16275573 (-)

Expression


Co-expression Network