AMCG00020273


Basic Information

Item Value
gene id AMCG00020273
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14195784 ~ 14232268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020273
ATGCCAGGATCCCATGCCATGGAAGAATACGCCCTCTCCTTCTGGATTTACATGGGGGTGATGTCTGTGTTCGTAGGGGGAGCCATGAAGAAGATCCTGGCTTCCCACATCAGTGCAGCCCCCAGTCTCCTGGTGTGGCTGGGActgctgctggtgctggagAGACTGTGCTCCCTGTGTCTGCCGGCACTGCTGGGGCTGGCTGTGCTGTGCGCTGCCTGCTGCTTGGTCTCTGGCAGGAGCTCGGCAGCCCAGACCCTGTCTGCCGAAGGGAAAGCGGTTTTCATAACAGGGTGTGACTCCGGGTTCGGGAAGGCGGCAGCCCTACAACTGGATGCTCTGGGATTCGAGGTGTTCGCCAGTGTCCTGGACCCTGCCGGGTCAGGGGCAACTGAGCTGCGGCGCCGCTGCTCCCCTCGTCTCACCGTGCTGCGCATGGACATCACCAAACCACAGGAGCAGCAGGACACTCCTCAGTGTTGCCAAACTGCAGGCCTGTGGGGACTGGTTAACAACGCTGGGATCTGCGTCAACTTCGGGGATGCCGAGCTGTCCCTTATGTCCAACTACAGAGGGTGCATGGAGGTCAACTTCTTCGGTACGCTGAACGTCACCAAGACATTCCTGCCCCTAGTGCGACAGGCAAAAGGGAGGATCGTCACCGTTTCCAGCCCTTCAGGGGAGCAACCCTTCCCCTGCCTGGCGGCGTATGGAGCGTCCAAAGCTGCCCTGAACCTTTTCATCAACACCCTGCGCCACGAGCTGGAGCCCTGGGGCGTCAAGGTCTCCACCATCCTGCCGTCATCCTACAAGACAGGTGAGGCTCCTCTGAGATCCCAACAACTGCCTACAACTTTCACAGCCCTGTCACGTACTAACTGACTGACCCTGCCTGACTGATTCACTTTTACATTTACCGACTGACTGTATGAAGGCACATCTTACATCATAcagcaccaattacagcctcccACTGTGTGTAACGGACTGTGGACCAGCACCACTCTGCAGCCCAGCAATGCAGTGAGAAATGCTTGGGGATGTTACTATGCAGGGCTTTACCGCTCACGTTCAAACTTCACTGAGCTGCTTTTACATGAATAGAGTTATTTCTGTTATTCCCACACCATTCCTCGCTAGCACAGTCTCACACTTACAGAGGGAGTAGTAAAGAGGAAGTGAAACTAAATCAGAGTGAAAAAAGGGAAAcgggcacacagacacacatgtatatacacatgcacaaacacacacacagcaatggaGTTTTGCCTGTGAACTGCTCACAATGAAGGTCAGCTAAGTTTACGCAAGTCAcagccaacacaaacacacaagaactGCTAGGAATTTCACAGTAAATTACTGTTAAGTTGCTTCAGGTACTTTACTGGGCTCTAAATGATGACAGATGCAGTATTTAATGGAAACAAACCTGCCATGTTCCAATTATATGAGGGACATTTTCAAGTTAATGCTGCTGTGCAATACAGTGCTCTTCATCTGTTTtctttactgttatttatttatgtatttacttatttatttagccaACTCTAGAGAGTTCTCCAGCACAGAGCccatctcctccctccctccagacTGGCCCCAaattctttcctctctcctctacCCTGAAAATCTGAAGGCACAAAACTGGGCTGTGACAGGactgtgactctgtgtgtgtctatgctGAGGCAGGGTGAGGCAGGAGACCTGAGCAGCAATGGTTGAGACGGCCTGCCTGCATTGTGCTGACTCTGCTCGGCTGCTCAAAGCAACATGGGCTCCGGCCAGCAGGGTGTGACCGCAGTGCGTGAAGCCAAGCACGAATCAGGAGAGGCAGGGTAGGCAGGGGGCCCTCACTGGGCCAAAGGGGGTGCTCCAGAAAGAcgcaccacagacacacacagggagttGCAGACCAGGGCTGAGAGGCTGGATAATTGTGCAAGCCGCCTTATAAAGGACTTCTGCTTTACTGCCTTAGTTGAACTTTGCCTGGATCTGTCTGTGGTGGGCTGTGCAGTTTCCAAGGTGCTTAaatagcatttattttctctttccttgTTGATGacataattatattgtaaatttgaagattatttatttgagcTTTACAGGTTCGTTCGGCAAGGAATTCTTTATCTAGTTGATTTATTAGGACCAACATCACTAATGCCACCCCCACAGTCATGCATTGACACAGTGCCACAGACCCTCTGTGTGGCTGCGCTACTTAGCCAGTGGTATATGTTCCTCTACACTGTAGGCCAGCCAGGTAATATTTGAGTAAATCTGCAGTGTGCAACGCTGTTCGgaaatttgtatgtattattctttgtacGTACTGTGTAGATAATACAATACTTTGGTTAATTGCCGCTGAATTGCTGAGTTGCTGAAGACGATAAGTATTGTTGTGGGAATAGAGTGCTGCTGTTAAAACACTGTCAGGGGGAtatttaccttaaaaaaaaattattgcaCCAAAGGCATCATTGATCAGtctgtgaaaagaaagaaataatctGATCCAGTTTAACAATATATGCTTGAAACCTTGATGTTCAAGTGTAGACATGACAACTAAATACCCAAGTTCACACTCACAGCCAGCTTCTAATACAATGATTCCTTTTCCTTCTACACCTTCCTGTTTAAggaatacaaaattcaaataagCCTAACcagtcattacatttaaatagactGTAAGCAAGATCAAACACAGTACATGTTCCAACAGCCTAGAAATAATATAGATGGCTAAAtggtgaatatatatttctatatggTATACTGTTGGCCAGCAAAGAGCTCTAAGTAATATCTGCAGACTGGgataaattatattgaacacCACTGCATTTTGGGGTCATTGACatttatgcaattaaaaaacaataaactaagGCATTTAACTTATTTGCAATTGTTTGTTAGGCTTCTTCCCTGGCTCTTGCAGACACAGAAGTATTggctttattcaatataatgttcTTTGCCTCCTCATAACCTTCCATAATAAGCTCTGAAATAGGCTGCACGCTCTTTTACCTTCGCCAAATCATAATTTCGGCACCACTGAGCATCCTTTCGTATCCAAATGGGAATGCGCACTTATCCTCGATGAGAAAAGTCTGATTTAAGCAAATGGTCTACTTAAATCCGTGATGGAAGAACCGAAAATCCCTGATATCAGTTAACGCGTTACCTCAATCCTATCCTGACTTTGTTAAAACATGTATGAAGAACGGACCCCAGTAGTATTGCTATGTCCACTGACTGACTCATGTCCTTTTCCAGGTCAGTCCAGTAATTTGGCATACTGGGAGCAGCAGAACAAGCAACTGATCCAAAGCTTGTCACCCAGCCTGCTGGAGGAGTACGGGGAGGAGTACCTTCTGGAGACCATGGAGCTGTTCAAGGCTTACTCCGAAACGGCCAATGAGGACTTCAGCCCGGTCATCAACACCATCAGCGAGGCGCTGCTCTCGCCGCGGCCCCAGGTCCGATATTATGCAGGTAAGGGCGTGGGGCTCATGTACTTTATCTACAGCTACCTGCCCCTGTCCGTCAGCGATcgcttcctgcagcagctgtttGTGAAGAAGAAAGTCCTGCCCAGAGCTCTGCGGAGCCAAAGCACcagccacaacaacaacaacaacatgctgCACAAATGAACAGAAACAGCAATCATCCAACAGAAACAAACTAGGACCTGTTGATGAAAATGAGACTGTAgtgatgttttgttatttgtattgctgttgttgtattttttggaaGGGATCACTGAACTGTACCAAACATTCTGTGAaggaacacaatttaaaaaaaagactttcaaTGATAAAGGTTCAGAACCCGAGTGTCGCAGAGAACAGGTGCTCCCATTAGATGGCATTCTTCAGAGATGGCTGAAGTGATTGAGGCTCTTCTCTGAATGGCCCTGTTTGGAAGAGGCCTGGTCACAGCCGCCATGCTGAGGATTTGCTGACCACCCCCCTGCCTGGGACCCCCAGCTCCCTGAGCTCCACACTGTACCTCTACTGTGCCACCAGTACACTCTCACATGAACACATTGTACCTTCACTCAGAAATACTCAGGTCTTCTTTTTTATAAACAGCACATCCACATTCATCCATTTGAAAGACCCTTTAACCATGTTTCACATAGAGTTGttgttttacctttttgtttaaaCACTCCTATACATTGTTGGTGTCTTCTTCCTCACTGTCTTTAGTCCAAATCACATCGTTGAATCATATTTATGCCAGTTTTCGTCATGAATCAGTGAAACTGtgaattttgtaaaaa
>TU77670
CTGAGATGGCGGTTCGAATCCAGGCAGGGGCTCTGGGCGCACTATAGTACTACCTAGCCATGCACCCCACTGGAGTAAACTGCACCTGCTGCACAAGGATGGGTCTGAAACAGCTGGGCCGCACGAGTACTGACCTCTGACGGTGACATGCAGAATGACAGGCAAGATTTGAAAAGGGTGTGACTCCGGGTTCGGGAAGGCGGCAGCCCTACAACTGGATGCTCTGGGATTCGAGGTGTTCGCCAGTGTCCTGGACCCTGCCGGGTCAGGGGCAACTGAGCTGCGGCGCCGCTGCTCCCCTCGTCTCACCGTGCTGCGCATGGACATCACCAAACCACAGGAGGTGCAGGACGCCCTGCACTGCACCAGAGCCAGGCTCGGGCCCCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020273 True 4333 mRNA 0.47 5 14206207 14232268
TU77670 False 390 lncRNA 0.62 2 14195784 14218381

Neighbor

gene id symbol gene type direction distance location
AMCG00020268 LOC106594058 coding upstream 97135 14085133 ~ 14098649 (+)
AMCG00020266 NA coding upstream 140054 14052358 ~ 14055730 (+)
AMCG00020263 NA coding upstream 173457 14000227 ~ 14022327 (+)
AMCG00020264 fhod1,LOC107740454,LOC106562854,LOC107553095 coding upstream 200645 13988080 ~ 13995139 (+)
AMCG00020262 LOC108432357 coding upstream 220225 13973414 ~ 13975559 (+)
AMCG00020271 NA coding downstream 25304 14257572 ~ 14259160 (+)
AMCG00020272 LOC108432371 coding downstream 29714 14261982 ~ 14272204 (+)
AMCG00020277 LOC102693979 coding downstream 62465 14294733 ~ 14302999 (+)
AMCG00020275 dus2,LOC108229071,LOC106942792 coding downstream 82124 14314392 ~ 14332409 (+)
AMCG00020276 NA coding downstream 107567 14339835 ~ 14383230 (+)
G62014 NA non-coding upstream 57955 14137426 ~ 14137829 (+)
G62013 NA non-coding upstream 58848 14136420 ~ 14136936 (+)
G62012 NA non-coding upstream 59497 14135298 ~ 14136287 (+)
G61904 NA non-coding upstream 265044 13877311 ~ 13930740 (+)
G61895 NA non-coding upstream 305356 13888151 ~ 13890428 (+)
G62039 NA non-coding downstream 9597 14241865 ~ 14288834 (+)
G62062 NA non-coding downstream 113028 14345296 ~ 14401302 (+)
G62108 NA non-coding downstream 322588 14554856 ~ 14621700 (+)
G62114 NA non-coding downstream 334451 14566719 ~ 14567438 (+)
G62118 NA non-coding downstream 345239 14577507 ~ 14578702 (+)
AMCG00020267 NA other upstream 244737 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 310668 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 323139 13863477 ~ 13872645 (+)
G61894 NA other upstream 360952 13833170 ~ 13834832 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other upstream 402840 13787014 ~ 13792944 (+)
AMCG00020281 slc12a4 other downstream 235532 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2350618 16582886 ~ 16604658 (+)
G62632 NA other downstream 2582106 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3201374 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 3226876 17459144 ~ 17471869 (+)

Expression


Co-expression Network