AMCG00020274 (atp6v0d1,LOC106588021,LOC103462946)


Basic Information

Item Value
gene id AMCG00020274
gene name atp6v0d1,LOC106588021,LOC103462946
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14241865 ~ 14249749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020274
CTACAGCCGGGTCTCTGTCGCTCCGCCGCCGCACCGACACATCCCTCTGCAGTCAGCAGGATCCGATACACACTTACCGTGAattaataaacaccaaacaTGTCCATCTTCCCGGAGCTGTATTTTAACGTGGACAACGGTTACCTGGAGGGACTGGTGCGAGGCTTCAAGGCGGGGATACTGTCGCAGGGAGACTATCTGAACCTGGTTCAGTGCGAAACCCTGGAAGATCTGAAGCTGCACCTGCAGAGCACAGACTATGGCAGCTTCCTGGCCAATGAGGCCTCTCCGCTCACTGTGTCCGTCATCGACGACAAGCTGAAGGAGAAGATGGTGGTGGAGTTCCGCCACATGAGGAACCAGTCGTATGAGCCGCTTGCCAGCTTCATGGACTTCATCACTTACAGCTACATGATTGACAATGTCATCCTGCTGATCACGGGCACTCTGCACCAGCGCTCCATCTCTGAGCTTGTGCCCAAGTGCCACCCCTTAGGGAGCTTTGAGCAGATGGAGGCAGTGAACATAGCCCAGACCCCAGCTGAGCTGTACAGCGCCATCCTGGATTGTATATCTGAGCAGGACCTGGATGAAATGAACATTGAAATTATCAGGAATACTCTGTACAAGGCTTATTTAGAATCCTTCTACAAGTTCTGCTCTACACTGGGAGGCACAACTGCAGACACCATGTGCCCGATTCTTGAAtttgAGGCAGACAGGAGAGCATTCATCATTACCATCAACTCCTTCGGGACGGAGCTGTCCAAAGAGGACCGGGCCAAGCTGTTCCCCCACTGCGGAAAGCTGTACCCGGAGGGGCTGTCTCAGCTGGCACGGGCTGATGACTACGAGCAGGTCAAAGCTGTGGCAGACTTCTACCCTGAATATAAACTTCTGTTTGAAGGAGCTGGCAGCAATCCTGGAGACAAAACCCTGGAAGACCGATTCTTTGAACACGAGGTGAAGCTGAACAAACTGGCCTTCTTGAACCAGTTCCACTTCAGCGTGTTCTACGCCTACGTGAAGCTGAAGGAACAGGAGTGCAGGAACATCGTGTGGATCGCAGAGTGCATCGCCCAGAGGCACCGTGCCAAGATTGACAACTACATCCCCATCTTCTAGAAGAGtcctctccccttccctcccctcctctccatTCCTCTcctctatattgttgtgttgtAACATGTCTCtcatatgtatgtttaaaataacaaaaaagaagaacTATTCCCCCGCctcaataaataataagtaaatgtCTATCTATTTAGCCAGCAGAAGGGCTGTCCCAGCAAGCTTTGGTGTTTGAACTGACTTTCAGATAATGGATCTATATCTGCCGATGGTTACTGTGCCTGCGTTTCACTTCTGCATGGCCTGTGGATGTCACTGCTTCAGGGACATAAGAGGGGGCCACTGTCCAAGCATGCAGTGTTAGCGTGAATTGTAGAGTTTTCGGATTTTGTCCAAAGGGCATTGGTGTCAGGGCCGTGAAGCAGGTTTGATTTGAACGCTTTGTGTACTGTCGATCACAAGCTGCTGATATTTGATGATTTTCTGATTTTTGATGAGTCCTGTTGGTGAAAACCACAGCAGGAGGACCTACAGAAGCACTGTAGATGGTTCCTTGGGTATCAAGGACAGGTTAAACAATCCGAATATTTGAGcttgggtttgtttttatttcactaaGATTAGTGTTTTTAGCAGAGATCAGTCTATCCTGATCCCTGCAGTCTTACCTTCCGATTAGATGTAGTGATCAGTACCCACAGTGAAGGTTTTGAGTAAAATTTAAGTATCCTACCTTGttctttttgtatgttttctttttcattttcgtTTGGCTTAGTCTTGCTCTGGCCTGGCATGCATGTCTGAAGCTCTCTGCACTGCTGCCTCCAGGGCTGAGTGAGAGGAGGGCTGGGGACTGGCTGCACTGGACAGTACAGCCTTCCTGATAAACCTTGTAGCCAGAGCTGCCTGAGGGAAGAAGCACAACCTCACCAGAAGGTGGTGCGATACCTTGGCAGGAGTTGTGTGGCGTGCCCCCTgggctcacacacacagtggctcCTGTAAAGCAAGGCACTTGAGTGTCTGAGGGAGGGCTGGGTCCACACACCCCCTCGAGCACTGACCCACTTGTACACCTGCTTAGCACCATTCTTTAAGGGCTTCATTCAGTCCCAGCAGGACTGAGGTCTAGACACACTGAGAGGACAGTGTGATAttacacagcacaacacactgaGGATAGTGCGTTATTGCACAACAGTGTGGAAATCCTGGCTGGTCTCAGCCGATGAGGAGTGTGGCGCAGCTAGCAGGGACCAGAGTGTGAAGTCCTGTCTTTGCCCTTCATGGTCTGGCATGCCTCCTCTCTGCCCTACTGGGAACACCAGCTCTGttgatgtctttttttattatttatcaaacAAGAAACTCTGACCCGTTTCTTTTACACATGTCAGAAACACTACTACATTCCATGTTGAAATTATGCTtcattctgtttcttttgtgttttatttgctgCTGGCAATTTAGTGTAGCTTCCTTTATGGCATTGAATGAGTAAAGtggactttaaaaaatatatataaattatgatCATTTTTTAGATTGTCAACTGTGAAAGCATTGAAAGCACTCTCCGCAAGTCTGTGTATCAAGGAATCTTTGATGCAGGTACCAGTGTAAAGGAtagaaaatcaaatgtttttttgaatcgtcaaaaaaacacagacaaaagaaaaacaactttagTGCATCATTGCTGTATTACCATTAGCTTTCTGATACTGTCCTTTAGTTTTAAGCTGAGACTTTTGTTATGACCTTATTTTGACAGCGGCTTCAAGACCAATTACaactttacttttaaataaaggtatctgataaatatgttgttttgcGGTGGTCAGAGCAATGGCAGGCTTCAGCTGTCGTGACTGTAGTGGAATGGCCCCTTAGTGAGTGTTTTGCCGTATGCGGTCAGGATACCTGTCTGGCTGAGCAGGGCCTGCCTCTGGTTGCAGGTAAATTGTGTCCCTCCCCCTTGTGAAGACCAAGATATTCCTAGAAAATAATTCTATAATAgaactttatttaattgaacggattaaattgtattatcatatttaactttaaaactatctatttctctctctctctctctgtatacatatatatatataaatttaaaaaaaaatgtccgaCACTTTTTAAGACCTGCCTTGTGATGTACATATTTGTGTGAAGGCCTACCGTCGAACACTTGATCTTGTTTCCTATTTTGTGAATATTGTGTTCCTCTTCAATGTGACAATAAATATGTAACTTAATTTCATCATGCAAA

Function

symbol description
atp6v0d1 Predicted to enable proton transmembrane transporter activity. Involved in left/right axis specification. Acts upstream of or within several processes, including animal organ development; pigment granule organization; and response to copper ion. Predicted to be located in lysosome and membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex and vacuolar proton-transporting V-type ATPase complex. Predicted to be active in early endosome. Predicted to colocalize with centrosome. Is expressed in several structures, including digestive system; integument; nervous system; pleuroperitoneal region; and presumptive retinal pigmented epithelium. Orthologous to human ATP6V0D1 (ATPase H+ transporting V0 subunit d1).

NR:

description
PREDICTED: V-type proton ATPase subunit d 1

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0032438 melanosome organization biological_process
GO:0046688 response to copper ion biological_process
GO:0008057 eye pigment granule organization biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02146 ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020274 True 3367 mRNA 0.46 8 14241865 14249749

Neighbor

gene id symbol gene type direction distance location
AMCG00020269 NA coding downstream 72224 14148574 ~ 14169641 (-)
AMCG00020270 tppp3,LOC106588035 coding downstream 96181 14138412 ~ 14145684 (-)
AMCG00020261 slc31a1 coding downstream 351334 13886384 ~ 13890531 (-)
AMCG00020251 prpf4,LOC107721635,LOC107743802,LOC107663789,LOC107691731 coding downstream 359676 13877282 ~ 13882189 (-)
AMCG00020254 NA coding downstream 389396 13850330 ~ 13852469 (-)
AMCG00020278 NA coding upstream 62663 14312412 ~ 14314001 (-)
AMCG00020282 NA coding upstream 156034 14405783 ~ 14427264 (-)
AMCG00020283 NA coding upstream 187047 14436796 ~ 14437815 (-)
AMCG00020284 NA coding upstream 189782 14439531 ~ 14440544 (-)
AMCG00020285 slc12a4,LOC107696691,LOC107548948,LOC107563468,LOC107740471,LOC107657107 coding upstream 212664 14462413 ~ 14484977 (-)
G61943 NA non-coding downstream 327699 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 418325 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 448934 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 490567 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 588486 13578409 ~ 13653379 (-)
G62066 NA non-coding upstream 95548 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 453762 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 782386 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 1173406 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 2230781 16480530 ~ 16480990 (-)
G62011 NA other downstream 110296 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 407136 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 428862 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 433532 13805020 ~ 13808333 (-)
AMCG00020229 NA other downstream 576273 13664076 ~ 13665592 (-)
G62061 NA other upstream 80773 14330522 ~ 14332407 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1849151 16098900 ~ 16102739 (-)
G62409 NA other upstream 1869240 16118989 ~ 16120153 (-)
G62415 NA other upstream 2003039 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 2022702 16272451 ~ 16275573 (-)

Expression


Co-expression Network