AMCG00020275 (dus2,LOC108229071,LOC106942792)


Basic Information

Item Value
gene id AMCG00020275
gene name dus2,LOC108229071,LOC106942792
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14314392 ~ 14332409 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020275
AGCCTCAATAACCCACATGTACCGTGCCCTGCAAGTAAATATCACCACGTCGCAGTCTGATGACGTAGATAGCCGTGCGTCGCACAGGAAGGGCGTTTTGAGGGGGCCCACGTGTTCGTTTCCACCAGCTGAAGTCtgctgtgcagtgtgcagtgtgccgGTGATGAAGGAGGACACAATGCGTGGGGCTGTGGGCAGGCTGTGCTTCCGCAATAAGACCATTTTGGCACCCATGGTGCGGGTGGGCACGCTGCCCATGAGACTGCTGGCACTGGACTATGGAGCTGACCTCGTCTACTGTGAGGAGCTGATTGATATGAAGATGCTGCAATGCCGGAGGGTAGTGAATGAGGTGCTGGACACAGTGGACTTTGTGGCCCCGGATGAAAGGGTGGTGTTCAGGACCTGCCAGCAGGAGAAGGAGCGCGTTGTCTTCCAGATGGGAACCGCGGACCCCCAGAGAGCACTGAGCGTGGCCCGGCTCATtgaaaatgaTGTCGCTGCCATCGATGTGAACATGGGCTGTCCCAAGGAGTACTCTACCAAGGGCGGCATGGGGGCGGCTCTCCTCTCGGACCCAGACAAGATTGAGGCCATCCTGAGCACGCTGGTCAGAGGCGTGTCCAAACCTGTCACCTGCAAGATCCGCATCCTGTCCTCGTTGGCCGACACGTTGAGCCTGGCACGGAGGATAGAGAAGACGGGCgaggagaggCCGCAGCACCCTGTCCACTGCGACGTCATCAGGGCTGTGTCCGAGGCGCTGACCATCCCTGTCATCTCCAACGGCGGCTCTCTAGACTGTGTGAAGACTCACGCTGACATCACGGCGTTCTGCACAGCCACGGGCACCTCCTCGGTCATGCTGGCACGCGCTGCCATGTGGAACCCCTCCATCTTCCGGCAGGAGGGTGCCCTGCCCCTGGAGCAGGTCATGGAGCAGTACCTCCAATACGCGGTGCGCTATGAGAACCACGCCTCCAACACCAAGTACTGCCTGTGCCAGATGCTGCGAGACCGGCTGGAGTCTCCACTTGGCAGACAGCTACATGCCGCCCAGACTTGCACAGAAATCTGTGATGTGTTCGGCCAGGGGCAGTTCTGCAGGGAGACCCAGGCCAGGATGGAGGCCAGGCGCTCAGCCACCCAGTCCAGGAGCCAGGACCCTGACGACCTCTGTGACGACACTGACGTCATCAAAATGGCTATCAAGTTTGACAGGAGAGACTACACCCCCCAGATCACACCCAAGATGTTCCTGTTGGAGTGGAGCCGCAGGGAGAAGCTGGCCCAGCCGCTGTACCACACGGTGCAGAGGCCCCTGGACAGgGACAAGTCCAAGAAGCTGGCAGAGCAGGCAGCGGCCATTGTGTGTCTGCGCAGTCTGGGCCTGCCGGAGGGGCGGCTGGGGGAGCAGGAGAGCGGCTTGGtcaagaagaggaggagggaggaggagggcgagTGCAATGGTGGCAACGATCCAGCAGATGCCACCAGGGAAACATAGCACCCCGACACCCCCGGGGAGAGCTGAACCAATGGACTGCAGGACAGGAACCCCAACCACCCCTCACTCTCGCTGCTACCTTCATGCAGGACGCCAGACTGCAGGGGGCGCTCTGTCCTGCTCTGTACCCTCTTCATGAttctatacttttattttttttaattgccattaTTAAACTCAATGCTGTTGTGGCGGTGGGCTGTCTGCAGGGTGGGGGCGCCAGGTCACACACACCTGGGATGACCTCCCCTTTTCTCGCTGCCCCTGCCACTCCAGCAGCCTCTCATCCACAGCTGGGTTTCTGATCGCTTCCTGATTTAATAAAGACTCTCTATTTTagataaattaaacatttgacaCTTTTTCTTCTAAGGACGGTAGACTGGGGTTGTAGTATTTAAAGAAGGGAGTTTATACTGGGCGGGGCGGGTCAGATCCAGTGGCCTACAATGCCATTATTCCTGGTCTCTCTCTGGAACGTTATACACTCTCAGTTTCTGAACGGTGTGCATGACCTTTACATTATTAAAGATATGAGCCGTACTGTCAGGGGCCTGCTTTGTCAAGCGTACAGCTACTGAGGTCTTTTAACAGCATGTTCAGCATTAAAAGAGTATCGTCCCTGAGGTTTCATCTGCATcgtgtgtttttaaaaggagaaGGAAACCTTTACTGGTGGGGAACTACTTATAAGAAGCTACTTTAttaatgattataaataaaccagatatttattttcacctcTTAACAGTCTATCATCCTATAGaagtttgttttcctctcttctCTACCTGATGGTTTATTTTGAGATTATATGTGATCGCAATGTTGTGTAGGTGCTTTGATTAGTGAAGCGTTTTTTGACAACATTGCAAAGGgtgctataccaaataaaaatggattgattggtTGACTTTACCCAGGGATGTCGCGCTCTCTTGCTGATTTTCTGTATTGCTGTGTGTGGAGTGCTGCTGATATAAGACTACCAGAGTTAGGTAGGGTTAGAATTAGTTTATTTCTACATGTGAACACCAGGTGGCAGTGCAGACACATCCCTCACTGATTTATCAGATGACAAATCGCCAGGAGTTTTTATAAATTCACAGAGTAATTAGAATCGGTGATTTAGGAATCATTTTTATCcacagcaatgtacagagacccTGCCTCAAATTGTAACCAGTAGACCATCTAGTCACCTCACTACAAAGCCTCTGTCctgtttatgtaatttataactCCAGATttgtacagtttattattattaaaacccATTATATTGATCCGAGGCAATACtagttctgttttttctgtcGTTCATCCCAATGGCACAATAGTTATTTTCTCCTGCagtgtttgtgctgtgtttatatGAATGCCTGAACTTTAAGTGCCAGGGCGGTGCGTTCTGGATGGACCGGGATACCGTGGGACACAATGCTGCCCAGTGAGTGACATGTGGATCAGCTAGGCCCAAATGCGGGACACCCTTTCTATATTGGGGGTGAACTCCTAGGCCTTCCTATGGACGAgattaaaacattgtgaaatgAGAGTATGTGTGACTCAGTCTGACACTGGCAGTTGAAAAGGAAACTCACAATAGGTTGGCATTCAGCAGTAAGATATCCATATGTCTTTACTTCAGCTTTGGGTAGGGTGAAGAGCTGTAAAAGTTTTACAATTGCAAATAAACACTTACTTTTCTTTGACA

Function

symbol description
dus2 Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be active in cytoplasm. Orthologous to human DUS2 (dihydrouridine synthase 2).

NR:

description
PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05543 DUS2; tRNA-dihydrouridine synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020275 True 3224 mRNA 0.51 16 14314392 14332409

Neighbor

gene id symbol gene type direction distance location
AMCG00020277 LOC102693979 coding upstream 11393 14294733 ~ 14302999 (+)
AMCG00020272 LOC108432371 coding upstream 42188 14261982 ~ 14272204 (+)
AMCG00020271 NA coding upstream 55232 14257572 ~ 14259160 (+)
AMCG00020268 LOC106594058 coding upstream 215743 14085133 ~ 14098649 (+)
AMCG00020266 NA coding upstream 258662 14052358 ~ 14055730 (+)
AMCG00020276 NA coding downstream 7426 14339835 ~ 14383230 (+)
AMCG00020279 amfr,LOC107566269 coding downstream 106669 14439078 ~ 14450651 (+)
AMCG00020280 NA coding downstream 119366 14451775 ~ 14461301 (+)
AMCG00020292 NA coding downstream 656621 14989030 ~ 14990430 (+)
AMCG00020291 NA coding downstream 658299 14990708 ~ 14991451 (+)
G62039 NA non-coding upstream 25558 14241865 ~ 14288834 (+)
G62014 NA non-coding upstream 176563 14137426 ~ 14137829 (+)
G62013 NA non-coding upstream 177456 14136420 ~ 14136936 (+)
G62012 NA non-coding upstream 178105 14135298 ~ 14136287 (+)
G61895 NA non-coding upstream 423964 13888151 ~ 13890428 (+)
G62062 NA non-coding downstream 12887 14345296 ~ 14401302 (+)
G62108 NA non-coding downstream 222447 14554856 ~ 14621700 (+)
G62114 NA non-coding downstream 234310 14566719 ~ 14567438 (+)
G62118 NA non-coding downstream 245098 14577507 ~ 14578702 (+)
G62185 NA non-coding downstream 699633 15032042 ~ 15034083 (+)
AMCG00020273 NA other upstream 82124 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 363345 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 429276 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 441747 13863477 ~ 13872645 (+)
G61894 NA other upstream 479560 13833170 ~ 13834832 (+)
AMCG00020281 slc12a4 other downstream 135391 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2250477 16582886 ~ 16604658 (+)
G62632 NA other downstream 2481965 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3101233 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 3126735 17459144 ~ 17471869 (+)

Expression


Co-expression Network