AMCG00020276


Basic Information

Item Value
gene id AMCG00020276
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14339835 ~ 14383230 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020276
ATGACGACTGCAAACTGCAGCGGGAACGAGGAGCTGGACTTCCGACTGATGTTCGGGGAGGACGGACCGCCGCCGCCGCTAGGCCCTGCAGGTCGGTACCTCCCGGCCCGAGTGCGCCCCTCCTCTCCGCCGGTGCTGGCTTTGCGACGCAGCCCAGTAGAATCCTGCCCTCTACCGATGCATGCTGAAGGAGTAGTGGAGGAAACAACAGATCTAGAGCCAGATGACAGTACGTCCTTTTACATCTTCAATGTTGATCAGAACCAGTCCGCAGTCAACCAGCCCATCGGGATCCCTCGCCATGGCCTGCAGCCACCACCGCCCCGGCTACAGGCGCACAAGAGCTATGACTCCACCTGTGATGCCCAGGGCAGCAAGTACAGCCCTATGGGTGGGCACAAAGCCTTCGAGTGCCCCAGCATCCAGATAACCTCCATCTCCCCAAACTGCCCCCAGGGCATGGAGGCCAGTGAGGACGGTCTGCAAACCAATGGGCCGGACAATGACTACCACGATAGACCTTTATCCAGGGACCACCTTTACCTTCCGCTTGACCACTCGTACAGGGACTCCTCCCTGAGCCCCAGCCCAGCCAGCAGCATTTCTTCCAGGAGCTGGTTCTCTGACGCTTCTTCGTGCGAGTCCTTCTCCCACGTGTACGACGACGTCGACTCTGAGCTCAATGAGGCAGCTGCCCGCTTCACGCTGGGCTCTCCGTTGGCCTCTCCCGGAGGCTCCCCGCGGGGCTGTCCCGGAGACGAGCCCTGGCAGCCGCACTACGCGTTCACCCACTCGCTGTCGCCTCGCCAGTCTCCCTGCCACTCTCCCCGTACCAGCATCACAGACGAGAACTGGCTGAGCCCACGGCCAGCCTCCAGGCCCTCCTCTCGCCCAACATCACCCTGCGGAAAGAGGCGCCACTCTAGTGCCGACATCTGCTACGCAGGGTCCCTGTCGCCCCACCACTCGCCCAGCCCCTCTCCCGGCCACTCCCCCCGCGGCAGTGTGACGGAGGACACCTGGATCAACAGCCCCGGCCTGCACAACGTGCAGGGGCTGGCCTCTGGCCTCTCTGCCTTCCAGTGCTGCCCCTCCGAGGCCGACATTCCCTCTAAAACCAGGAAGACCTCTCAGGATCACACAGCCATGCAGCCAGGCAAGAGTGAGCACTTCCTGGAGGAGGGGGGCAGTGGCTCCCCTGCCCTTGAGTCCCCCGTGGACGATGGCTCGCATGGGCTGAAGAAGGATGGCCCTGGGGAGCAGTTCCTGTCTGTTCCCTCACATTTCACCTGGAACAAGCCCAAGCCAGGACACACACCCATCTTCCGAACATCCTCCCTGCCTCCGCTGGACTGGCCCCTGCCCAGCCAGTTTGGACAGTATGAGCTGAAGATTGAGGTCCACCCCAAGGCCCATCACAGAGCCCACTATGAGACAGAGGGCAGCCGGGGGGCAGTCAAGGCATCTTCTGGAGGGCATCCTGTGGTCAAGGTGAGGAAACCACTCCCTGCTTTAGACTGGGTAGACCATTTCGTCATGCATGTTGCTAGGAGACCTGTTTATAAttcttctttttccttctttctgttTCAGCTCATAGGCTATAATGAGAAGCCAGTCAACCTACAGATGTTCATTGGAACAGCTGATGATCGTTACTTAAGACCACATGCCTTCTACCAGGTGCACAGAATTACAGGGAAGACTGTCGCTACAGCTAGCCAGGAAATCATCATCGCCAGTACAAAGGTTCTCGAAATTCCTCTCCTTCCCGAAAACAATATGTCAGCCAGCATTGACTGCGCCGGCATCCTGAAGCTGCGCAACTCTGACATAGAGCTGCGCAAGGGCGAGACAGACATCGGCAGGAAGAACACACGTGTAAGAGTGGTGTTCCGCGTGCACATCCCTCAGCCCAGCGCCAAGGTGCTGTCCCTGCAGGCTGCTTCCATCCCTGTGGAGTGCTCCCAGCGATCGGCCCAGGAGCTGCCCCAGGTGGAGAAGTATAGCGTGAGCAGCTGCTCTGTTAATGGCGGAGAGGAGATGGTCATCACTGGGTCAAACTTCTTTCCCGAGTCCAAAGTCATATTCCTGGAGAAGGGGCCTGGTGAGTTGCTGTTTTACTGCTCTAGAGCTGATGTATACAGTTCATTAAACCCAATTTGTAGAACCACACTCTGGACTGTATGCGTGTCTTGTCCCCTCTCAGTTGaTGGGCGACCTCAGTGGGAAGTTGATGGTAAAATAATACGGGAAAAAAGCCAAGGATCTACCCTGGTCATTGAGATCCCTCCCTACCACAGCAAGACGGTGGTGTCTCCGGTGCAGGTGCAGTTCTATGTGTGCAATGGAAAGCGGAAAAGGAGCCAGTCCCAGCGTTTCACGTACTCGTCCGttCTGGTTAAACAGGAGCACCGTGATGAGATGGACCTGCCCACACTGCAGCCCCTGGTCCACACTGCCAGCCTGCCCGGCCTTCACCCTGTCAGGACACAGCTGCCTTCACCCGATCAAGGCCTTCCTCACGACGCCCTGCTCTCCAGCTCTCCCCGGGGCCTGGTCACTACCCCGCTGCCAGCCCCTCAACAGTCTACCTACACCCCCCTGGGCCCTCCGGCGCTGCCTCACCTGCCCCAGCAGCACATGCCTCACCTACAGGGCCGGAACCTAGGGCCCGGCGCCGACTGCCAGCTGGTCAGCCCTCCCCCGATGCACCAGACTTTCCACTCCACGCCGGCCCCGCCAGCCCGGCCATCCTACCAGTCTATGCAGCCCCCCTTGGCGTATAATGGTCAAGCAGGTCTTCCCATGAGTGCCGGCTCGCCACAAGCCTATGAGCAGATGTCGTTCCAGCCTGACCCTGCCAGCTCTCACCCCCTGGGTTTGGGCTGCCAGTCCATGGTCTACCACTCTTCTCCCTCCTCAGCCTCCAACTCCACTACTCCACCTGCCTCCAGCCACCCACTCACCCACCCCACTCCTCACCTGCAGTCCCTGGGCTACCACTGTCCCCCCCCTGCACAGGTGTCCTCCCCACCTGGTGCCCATTCCATGGGCCAGCCCTCCTCACAGATGCAGTCCATGGTCTACCACCCCCCCAGCCAGAGATCAGCATCCTCCCCCTCTCCTACCACCCCTCTGCCCATGGTGCCCTCCCCACACTCTGGGCCCTCCTCCCCTCAGATGCACCCTTTGCCATACCAGTCTCCCACCCCGGGGCCAGCCTCCTCCCCTTCTCCCACCTCTGGCAGTCCCATGGTTCACCTGCCCTCCCCCCAGGCTCACAGTCCCAGCTTGGCCAGCCTGTCTGGGCCTGGCCCCCTGGGACACCCCCAGGCCCCACAGCTTCCCTTCCCCCCAAAGGAGGAGAACCTGAACATCAAGCAGGAACCCGAGGACGCTGAGCTGACCTTCCGATCCATCGGCCTGCAAGACATCACGCTGGATGATGGTAAGGCTTTCCCCTAG

Function

GO: NA

KEGG:

id description
K17333 NFATC3, NFAT4; nuclear factor of activated T-cells, cytoplasmic 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020276 True 3468 mRNA 0.60 11 14339835 14383230

Neighbor

gene id symbol gene type direction distance location
AMCG00020275 dus2,LOC108229071,LOC106942792 coding upstream 7426 14314392 ~ 14332409 (+)
AMCG00020277 LOC102693979 coding upstream 36836 14294733 ~ 14302999 (+)
AMCG00020272 LOC108432371 coding upstream 67631 14261982 ~ 14272204 (+)
AMCG00020271 NA coding upstream 80675 14257572 ~ 14259160 (+)
AMCG00020268 LOC106594058 coding upstream 241186 14085133 ~ 14098649 (+)
AMCG00020279 amfr,LOC107566269 coding downstream 55848 14439078 ~ 14450651 (+)
AMCG00020280 NA coding downstream 68545 14451775 ~ 14461301 (+)
AMCG00020292 NA coding downstream 605800 14989030 ~ 14990430 (+)
AMCG00020291 NA coding downstream 607478 14990708 ~ 14991451 (+)
AMCG00020298 NA coding downstream 777367 15160597 ~ 15165994 (+)
G62039 NA non-coding upstream 51001 14241865 ~ 14288834 (+)
G62014 NA non-coding upstream 202006 14137426 ~ 14137829 (+)
G62013 NA non-coding upstream 202899 14136420 ~ 14136936 (+)
G62012 NA non-coding upstream 203548 14135298 ~ 14136287 (+)
G61895 NA non-coding upstream 449407 13888151 ~ 13890428 (+)
G62108 NA non-coding downstream 171626 14554856 ~ 14621700 (+)
G62114 NA non-coding downstream 183489 14566719 ~ 14567438 (+)
G62118 NA non-coding downstream 194277 14577507 ~ 14578702 (+)
G62185 NA non-coding downstream 648812 15032042 ~ 15034083 (+)
G62251 chd9,LOC106562403 non-coding downstream 914517 15297747 ~ 15298181 (+)
AMCG00020273 NA other upstream 107567 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 388788 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 454719 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 467190 13863477 ~ 13872645 (+)
G61894 NA other upstream 505003 13833170 ~ 13834832 (+)
AMCG00020281 slc12a4 other downstream 84570 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2199656 16582886 ~ 16604658 (+)
G62632 NA other downstream 2431144 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3050412 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 3075914 17459144 ~ 17471869 (+)

Expression


Co-expression Network