AMCG00020278


Basic Information

Item Value
gene id AMCG00020278
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14312412 ~ 14314001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020278
ATGTCAACCGTGTCCGACAGCGGCAACCAGGAAGTGGTTATTCGGATACCCCGACAGATGCAAGAGCGCATGGACAATCTGAAGCAGGTGAAACGGAAAAAGTTTCAGAGAGTCATCACGTCCAGGCCAGGCAAGATGCTCATTACGAGCAAACGACCCCAGCTTAACCAGCCTGCTAGCTTTATCCTGGGGAAGTTCGACCCGCTTGTTCTGGCTTCAAAAGGGTGGAAGCATAACAAATCGTTTGGGGACTATTTCACTATCCACAACACGCAGGACACTCCCCCGTTTGTCACCGATGGCCAGAGAGATGAGAAGGAGAAAGGAGGCAGCAAAACTGTAACTTTTAAATCTCTGCACTTGTCCCCCGAGATAGTGGAAGCCCTGCAGGCGTGTGGCATTGAGCACCCCACCACTGTGCAGCTGCAGACCATTCCCAGGCTGCTGCGTGGACACAACTTGCTGTGTGCTGCTGAGACGGGGTGTGGTAAGACTCTGAGCTACCTGCTGCCCGTCGTCCAATTACTGAGAGGAGAGACGGAGGGGGTACTGGGTGGGCAGACACGCTGTTTGGTGCTGGTGCCATCCAGGGAGCTGGCAGAGCAGGTGTCCGGTGTGGCGCGCTCCCTATGCTCACGCCTTGGGCTGAGCGTGCGGGTGGTGGGTGGGGGTAGGGGTGTGGGCAGGATTAAGCAGGCCTTCTCCCACGGGCCTCCCAACGTGCTGGTTGCCACGCCTGGGGCTCTTTACAAGGCTCTGCGGCGGCGCTGTGTAGATCTGGGTGATCTGAGCTTCCTGGTGCTGGATGAGGCGGACACCCTGCTGGACCAGAGCTTTGCTGGGCTGGTGGAGAGCATCCTTCAGCGGGTGCAGGTGGCCTCCAGCCCAGCCCAGACTCGGGGCCCAATCCGCAGAGCCCAGCTGGTTCTAATTGGAGCCACATTCCCCAGCGGTGTGGGTGAGCTCCTGTCACAGGTGACGGACCTGGGCAGTATTGTCACGGTGACGAGCCGTGGGCTACACTGCCTGATGCCGCACGTGAGGCAGACCTTTGTAAAGGTGAGGGGTGCTGACAAGCTGGCAGAGCTTCTGCAGGCCCTGCAGGGAGAGGCGGCAGCACAGCCTGGGGGTGGGGTGCTGGTGTTCTGTAACAGTGCTGCCACCGTCAACTGGCTAGGCTTTGCGTTGGAGGAGCAGGGTGTGCGGCATGTGCGGCTGCAGGGCCAGATGCCAGCTGCCATGAGGGCTGGCATCTTCAGCTCCTTCCAGAGTGGTCGGGTGGACGTGCTGCTCTGCACTGACATCGCCTCACGCGGCCTGGACACACAGAGGGTGCGTCTGGTGGTCAATTACGACTTTCCGCACTCACACACGGACTACCTGCATAGGGCAGGAAGGGTAGGCCGTGCTGGGGCCAGAGGCGCCACAGCAGGCGGGGGGACTGTGCTGAACTTCGTCACACACCCCTGGGACGTGGAGCTGGTCCAGAAGATTGAGATGGCAGCACGCAGGAGGACAGCTCTGCCTGGGATGGAGTCTGCCATTCACACTCCTCCCCTCAAAACAGACCCTAAAAGTAACCAGGAATAa

Function

GO: NA

KEGG:

id description
K20096 DDX28; ATP-dependent RNA helicase DDX28

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020278 True 1590 mRNA 0.60 1 14312412 14314001

Neighbor

gene id symbol gene type direction distance location
AMCG00020274 atp6v0d1,LOC106588021,LOC103462946 coding downstream 62663 14241865 ~ 14249749 (-)
AMCG00020269 NA coding downstream 142771 14148574 ~ 14169641 (-)
AMCG00020270 tppp3,LOC106588035 coding downstream 166728 14138412 ~ 14145684 (-)
AMCG00020261 slc31a1 coding downstream 421881 13886384 ~ 13890531 (-)
AMCG00020251 prpf4,LOC107721635,LOC107743802,LOC107663789,LOC107691731 coding downstream 430223 13877282 ~ 13882189 (-)
AMCG00020282 NA coding upstream 91782 14405783 ~ 14427264 (-)
AMCG00020283 NA coding upstream 122795 14436796 ~ 14437815 (-)
AMCG00020284 NA coding upstream 125530 14439531 ~ 14440544 (-)
AMCG00020285 slc12a4,LOC107696691,LOC107548948,LOC107563468,LOC107740471,LOC107657107 coding upstream 148412 14462413 ~ 14484977 (-)
AMCG00020288 slc6a2,LOC103378986 coding upstream 183233 14497234 ~ 14545943 (-)
G61943 NA non-coding downstream 398246 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 488872 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 519481 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 561114 13751084 ~ 13751298 (-)
G61803 NA non-coding downstream 659033 13578409 ~ 13653379 (-)
G62066 NA non-coding upstream 31296 14345297 ~ 14401302 (-)
G62143 NA non-coding upstream 389510 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 718134 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 1109154 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 2166529 16480530 ~ 16480990 (-)
G62011 NA other downstream 180843 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 477683 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 499409 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 504079 13805020 ~ 13808333 (-)
AMCG00020229 NA other downstream 646820 13664076 ~ 13665592 (-)
G62061 NA other upstream 16521 14330522 ~ 14332407 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1784899 16098900 ~ 16102739 (-)
G62409 NA other upstream 1804988 16118989 ~ 16120153 (-)
G62415 NA other upstream 1938787 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 1958450 16272451 ~ 16275573 (-)

Expression


Co-expression Network