AMCG00020281 (slc12a4)


Basic Information

Item Value
gene id AMCG00020281
gene name slc12a4
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14467800 ~ 14472545 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020281
ATGAGTATGTGCCTGGCTCTGATGTTCATCTCCTCCTGGTATTACGCAATCGTGGCTATGGTTATTGCAGGCATGATCTACAAGTACATCGAGTATCAGGGCGCAGAGAAGGAGTGGGGAGATGGGATCCGGGGCCTGTCTTTGAGTGCCGCCCGCTACGCCCTGCTGAGGCTAGAGGCAGGGCCACCCCATACCAAGAACTGGAGGCCGCAGCTGCTGGTCCTGCTGAAGCTGGATGAAGATCTGCATGTGAAGTACCCGCGGCTGCTCACCTTTGCCTCGCAGCTCAAGGCTGGCAAGGGGCTGACCATCGTGGGCTCCGTCATTCAGGGCAACTTCCTGGACAACTATGGGGAGGCCCAGGCCGCTGAACAGGCCATTAAGAACATGATGGAGATTGAGAAGGTGAAGGGGTTCTGCCAGGTGGTGATTGGTGCCAAGGTGCGAGAGGGCATTGCTCACCTGATCCAGTCATGTGGCCTGGGGGGCATGAAGCACAACACGGTGACCAcagagtacagcacagtgaagCACTGCCACAGCTCCCCAGCCCAGCTCACTTGGACCATACCCCCTCTACACACTGACCCCAAAACTGCTCCAATGCATCTGATGGCCATATTAGATTGGTGTCTCTAA
>TU77751
TGCGCTGTTCACAGCTGTGTGTCTTCCTGACAGGGCTCTGTCCTTCCTGGGTATGAGTATGTGCCTGGCTCTGATGTTCATCTCCTCCTGGTATTACGCAATCGTGGCTATGGTTATTGCAGGCATGATCTACAAGTACATCGAGTATCAGGGCGCAGAGAAGGAGTGGGGAGATGGGATCCGGGGCCTGTCTTTGAGTGCCGCCCGCTACGCCCTGCTGAGGCTAGAGGCAGGGCCACCCCATACCAAGAACTGGAGGCCGCAGCTGCTGGTCCTGCTGAAGCTGGATGAAGATCTGCATGTGAAGTACCCGCGGCTGCTCACCTTTGCCTCGCAGCTCAAGGCTGGCAAGGGGCTGACCATCGTGGGCTCCGTCATTCAGGGCAACTTCCTGGACAACTATGGGGAGGCCCAGGCCGCTGAACAGGCCATTAAGAACATGATGGAGATTGAGAAGGTGAAGGGGTTCTGCCAGGTGGTGATTGGTGCCAAGGTGCGAGAGGGCATTGCTCACCTGATCCAGTCATGTGGCCTGGGGGGCATGAAGCACAACACGGTGGTGATGGGCTGGCCCTACGGCTGGAGGCAGAGCGAGGACCCCCGCGCTTGGAAAACCTTCATCAGTAAGAGCCTGGAGTCCCCTTTAACATcagcctatatatatacaccgatcagccataacattatgaccacctgcctaa

Function

symbol description
slc12a4 Predicted to enable potassium:chloride symporter activity. Predicted to be involved in several processes, including cell volume homeostasis; inorganic ion homeostasis; and inorganic ion transmembrane transport. Predicted to act upstream of or within potassium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural keel; anterior neural rod; central nervous system; eye; and margin. Orthologous to human SLC12A4 (solute carrier family 12 member 4).

NR:

description
solute carrier family 12 member 4

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015379 potassium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020281 False 639 mRNA 0.56 5 14467852 14472545
TU77751 True 701 TUCP 0.57 4 14467800 14469300

Neighbor

gene id symbol gene type direction distance location
AMCG00020280 NA coding upstream 6499 14451775 ~ 14461301 (+)
AMCG00020279 amfr,LOC107566269 coding upstream 17149 14439078 ~ 14450651 (+)
AMCG00020276 NA coding upstream 84570 14339835 ~ 14383230 (+)
AMCG00020275 dus2,LOC108229071,LOC106942792 coding upstream 135391 14314392 ~ 14332409 (+)
AMCG00020277 LOC102693979 coding upstream 164801 14294733 ~ 14302999 (+)
AMCG00020292 NA coding downstream 516485 14989030 ~ 14990430 (+)
AMCG00020291 NA coding downstream 518163 14990708 ~ 14991451 (+)
AMCG00020298 NA coding downstream 688052 15160597 ~ 15165994 (+)
AMCG00020296 NA coding downstream 693469 15166014 ~ 15199292 (+)
AMCG00020295 NA coding downstream 739545 15212090 ~ 15218030 (+)
G62062 NA non-coding upstream 66498 14345296 ~ 14401302 (+)
G62039 NA non-coding upstream 178966 14241865 ~ 14288834 (+)
G62014 NA non-coding upstream 329971 14137426 ~ 14137829 (+)
G62013 NA non-coding upstream 330864 14136420 ~ 14136936 (+)
G62012 NA non-coding upstream 331513 14135298 ~ 14136287 (+)
G62108 NA non-coding downstream 82311 14554856 ~ 14621700 (+)
G62114 NA non-coding downstream 94174 14566719 ~ 14567438 (+)
G62118 NA non-coding downstream 104962 14577507 ~ 14578702 (+)
G62185 NA non-coding downstream 559497 15032042 ~ 15034083 (+)
G62251 chd9,LOC106562403 non-coding downstream 825202 15297747 ~ 15298181 (+)
AMCG00020273 NA other upstream 235532 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 516753 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 582684 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 595155 13863477 ~ 13872645 (+)
G61894 NA other upstream 632968 13833170 ~ 13834832 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2110341 16582886 ~ 16604658 (+)
G62632 NA other downstream 2341829 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 2961097 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 2986599 17459144 ~ 17471869 (+)
G62895 NA other downstream 3455783 17928328 ~ 17928904 (+)

Expression


Co-expression Network