AMCG00020288 (slc6a2,LOC103378986)


Basic Information

Item Value
gene id AMCG00020288
gene name slc6a2,LOC103378986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14497234 ~ 14545943 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020288
ATGGTCAAGTATGGTCCGCTGATGAGCACGGCAGGCAGCACTCCAGTTCTCCAAGAGAAGAAACCTATCCCGTGTGGACTGTGTTCCTTCCTCAGTGCCATCATCTCcatctccaccaccaccatcatccTCAGCACCATCACCACCATCATCGATCCCAGCGCCATCACCATCCCTGCCAGCCCTTCGCACCCTCTCCGTATCCGAGGCTCGCAGGCGCAGGCGCCAGGGCTGCGGGTCCTGGAGAGGATGAACGTGCAGGTCCTGGCCGACCACACGCTTACCTCCGTGGCCCCTTTCAAGCGCTACATCAACGTGGAGAAAAAGGACGTGGAGTTGATCCTGctGACTGAGTTTAAGAGAATGCCAAGGATGGGCGGCATGGAAGCTGTCATCACCGGCCTCACTGATGACTTCAAAATCCTCAAGAAGAACAGGAAGCTGTTCACTTTCATCACAGCATTCGGCACCTTTTTGGGTGGGGTTTATGTCCTGACACTACTGGATCAGTACGCCGCTGGAACGTCAATTTTATTTGGAGTTCTGATAGAGGCCATTGGGGTGTCCTGGTTCTACGGCGTGGACCGATTCAGTGAGGATATCGAGCGCATGATGGGCTTCAAGCCAGGTCTGTACTGGAGGCTGTGCTGGAAATTTGTCAGCCCCGCTTTTCTGCTGtttgtggTGATCGCCAGCATTGTGACACGCCCTAACTTGAAATACGAGGACTACGTCTTCCCTCCCTGGTGTAACCTGGTTGGATGGGGAATTGCAATGTCATCAATGCTCTTCGTCCCGATCTACGCCATCTACAAGTGCTTTACTTTGAAAGGAACAATGAAAGAGAGAATAGCCTACTGCATTACCCCTGAACATGAACATCATCTTGTAGCTGAGGGAAACATCCGGCAGTTCAAGTCTGGAGAGCTGAACCATCAGACACGCTGGGAGCCCTGGCCTGCATTGTCACAGGGATTACGAAACATTAACGACTCCAGCAGCAGGCCGTCGAGATTTGCAGAGTCTGCAGGAGCCTGGCAAGCCATGATCAAGGAAGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACGCGATACGGATATCAGGAACATCACCGGCAGAGAGAAAAAGTCCATaACTGCAGGGAGGTAGTGGAATTCCAGTTAtctctaaaacaacaaaaaggactCTGGAGTGGGGCAGgaccagggctggggaccctgctgtactgttgTGTAGCTCTCCAGAACCAGGTCATCTTCACATGCTATATGAGATCCTAA

Function

symbol description
slc6a2 Predicted to enable dopamine:sodium symporter activity and norepinephrine:sodium symporter activity. Predicted to be involved in dopamine uptake involved in synaptic transmission; norepinephrine transport; and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body membrane; and presynaptic membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in hypertension and neurocirculatory asthenia. Orthologous to human SLC6A2 (solute carrier family 6 member 2).

NR:

description
PREDICTED: sodium-dependent noradrenaline transporter

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020288 True 1362 mRNA 0.54 15 14497234 14545943

Neighbor

gene id symbol gene type direction distance location
AMCG00020285 slc12a4,LOC107696691,LOC107548948,LOC107563468,LOC107740471,LOC107657107 coding downstream 12257 14462413 ~ 14484977 (-)
AMCG00020284 NA coding downstream 56690 14439531 ~ 14440544 (-)
AMCG00020283 NA coding downstream 59419 14436796 ~ 14437815 (-)
AMCG00020282 NA coding downstream 69970 14405783 ~ 14427264 (-)
AMCG00020278 NA coding downstream 183233 14312412 ~ 14314001 (-)
AMCG00020287 NA coding upstream 8921 14554864 ~ 14564641 (-)
AMCG00020286 NA coding upstream 18831 14564774 ~ 14578838 (-)
AMCG00020289 irx6a,irx6,LOC107713056,LOC107755049 coding upstream 88623 14634566 ~ 14639369 (-)
AMCG00020290 irx5a,irx5 coding upstream 225041 14770984 ~ 14775208 (-)
AMCG00020294 NA coding upstream 568964 15114907 ~ 15128403 (-)
G62066 NA non-coding downstream 95932 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 583068 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 673694 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 704303 13789391 ~ 13792931 (-)
G61872 NA non-coding downstream 745936 13751084 ~ 13751298 (-)
G62143 NA non-coding upstream 157568 14703511 ~ 14767563 (-)
G62191 NA non-coding upstream 486192 15032135 ~ 15034076 (-)
G62283 LOC107575789 non-coding upstream 877212 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 1934587 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 2122954 16668897 ~ 16669511 (-)
G62061 NA other downstream 164827 14330522 ~ 14332407 (-)
G62011 NA other downstream 365665 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 662505 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 684231 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 688901 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1552957 16098900 ~ 16102739 (-)
G62409 NA other upstream 1573046 16118989 ~ 16120153 (-)
G62415 NA other upstream 1706845 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 1726508 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 2070380 16616323 ~ 16624970 (-)

Expression


Co-expression Network