AMCG00020296


Basic Information

Item Value
gene id AMCG00020296
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15166014 ~ 15199292 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020296
ATGATACTGAACTGCACACCCATCCGAGTCACTGCAGAATCACTGCAGATGaaacaaaagacCCTGAAGGCCAGCCATGATGCCGTGATGTCCAAGGTGGACGAACTTAATGCACTGCTGAAGAAGGAGCGTCTCAAGTCCCTGAGTctggagcagcagctgcaggccGTCTCCCTGGCTCGCCACCGGGCCGAAGAGCTGCAGGACCGTGTCACTGACTTGGAGAAGGAAAGAGATCTGCTTAAGGAAAACTATGACAAGCTTTTCAACAGCGCCTTCGATCTGACCCATGAACAGCAATGGAAGACGAGGGAGAAGCAGCTGAACCTACAGATCGCCCAGCTCGAGGTGGCACTGAAGTCGGACCTCACTGACAAGAATGAGATACTGGACAAGATCAAGCAGGAGAGAGAACAAAATGAGATCTTGTCACAGCAAAATCAAGAATTGCGGCTAAGAGTTCTGGAGCAGAAGCAACAGTTGGATGAAATTAAAGATCGTATGAAGTTTTTCACCAAGgaGAGTGATATTGATGTGGCTGAACTCAGTGAGGCATTGATGCTTATAAAGGTTCGCAAAAACCAGAAGAATGGGGAGCTGGAGTTCCTGGAGAAAGCAGAAGATAATGTGAACACGGATGTGCAGCGTTCCATGAGGGAGCTCCAGGCCAATCACGCAGATACCGTGCAGGAGCTGGAGAAAACACGCAACATGCTCATCATGCAGCACAAGATTAATAAGGAATATCAGactgaGGTTGAAGCCGTAACCCACAAGATGGAAGACATTAAGCAAGAATACGAGCTGGAACTCGAGAAGTTGGCCCAGCTGCTGGACATGAGGGCCGCTCGTATTCGGAAACTGGAAGCCCAGTTAAAGGATGTTGCTTACGGCACCAAGCAGCACACGTTCCGGCGCAAGAGGGGGCCTGCGGACAACTCCGACCCCGAGGTGGACGAGTTTGATGAGACACTGCACttggagagaggggagaacCTGTTCGAGCTGCATGTGGAGAGGGTGAGCTTCTCCCCCGAAGCACTGCAGGCCCTGGGGGACCGGGAGCCCACCACCTTCTGTACCTATGCCTTCTATGACTTCGAGCTACAGGCCACCCCCGTGGTCAGGGGCTCCCATCCAGTCTACAGCTTCACCTCCCAGTACCAGGTGCGAGTGGATGACTTCTTCCTGCAGTATTTGCAGACCAGTGCAGTCACCCTGGAGGTCCAGCTTGCCGAGGGCACGGCCTACCAGACCTTTGCTGCCTGCCAGCTGAGGCTGCATGACCTCCTGGACAGGAACGGGAAAGTGTTTGGCACAGCTCCTCTGGTTGGTGTTGGCAGCAACGTTAAGGCGTGCGGTACAGCGGAGTACTGGCTACGGCTACGGATTCCCATGGACCAGGCTGTCCGCTTGTACAGGGAAAGGACCATGGCAGGGCCGGCGCTCCTGTCCCCAGCTTCCACCGAGGGCAGTCTGAACGAGCTCCACATCACCGTGCAGCACTGCAGTGACCTCCGATCACGGCAGCCCGAAGTGCAGCCCAGCCCCTACGTGATGTACAAGTTCTTCGACTTCGCAGACCATGATACAGCCATTGTTCCCAGCAGCAATGACCCCCACTACGACAACCACATGAGCTTCCCAGTGCCCATGAATGCTGACCTTGACCGCTACCTGAAATCAGAGGTGCTGTGGCTATACGTGTTTGATGACGCAGACACACAGGGGCACCTGTACCTGGGGAAGGCCAAAGTGCCTCTCATATCCTTGGCTCACGACAAGGGCATTACAGGCACTTTTGAGCTGCTGGATCCGGAGGGATCTCCGAGCGGCACCATCAACGTGACCCTGAAGTGGAGCCTGTCCTACCTCCCTCCCCGGGGCTCCTCCATGACAGTGGAACAGGCCAAGTTTGTGCCCAGAGAGGTACCAGAAAAACTGAGCACCGAGGAGGAGAAGAGCAAACTCTTGCCCACTGTGCCACCCATCTCTACCACACAGAGTCCTCTGCCAAAACCAAGACAGCGCCTGCTTTTAAAGGATACGCTAACGAGCAAGAAAGTGTCCTTTGTCGACGTTGCAGACCCTGAAAGCCTAGCTCGGACAGGGCCAGAGCTCGGCAAAGAGCAGAGGCCACAGAGCACccaagaagaagaggaggaggaggaagaggaggactCCCGGATCTCAGAAGGGCAGCTGGCAGCTAACGGCTCCCTATCCTCAGAGGAAGAGTCCATCTCAGAGGAGCTTCCTCAGTACAGCAAAGAAGGGGATGATGCACTGGCCACTGATCTGAACGAATCAATACTCTCTGACAGTGATGACTGCATTGTTCCAGCGCAGGCATCTCAGGGCAGGAAGCAGATCATACAGAAGTGCTACTCAAGTGTTGGAAGGTAG

Function

GO:

id name namespace
GO:0009880 embryonic pattern specification biological_process

KEGG:

id description
K16550 RPGRIP1L; protein fantom

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020296 True 2406 mRNA 0.55 16 15166014 15199292

Neighbor

gene id symbol gene type direction distance location
AMCG00020298 NA coding upstream 20 15160597 ~ 15165994 (+)
AMCG00020291 NA coding upstream 174563 14990708 ~ 14991451 (+)
AMCG00020292 NA coding upstream 175584 14989030 ~ 14990430 (+)
AMCG00020280 NA coding upstream 704713 14451775 ~ 14461301 (+)
AMCG00020279 amfr,LOC107566269 coding upstream 715363 14439078 ~ 14450651 (+)
AMCG00020295 NA coding downstream 12798 15212090 ~ 15218030 (+)
AMCG00020297 aktip,LOC107713059 coding downstream 36391 15235683 ~ 15244984 (+)
AMCG00020299 NA coding downstream 45730 15245022 ~ 15247620 (+)
AMCG00020304 LOC106562398 coding downstream 243619 15442911 ~ 15496323 (+)
AMCG00020306 sall1,LOC106587587 coding downstream 560793 15760085 ~ 15770745 (+)
G62185 NA non-coding upstream 131931 15032042 ~ 15034083 (+)
G62108 NA non-coding upstream 544314 14554856 ~ 14621700 (+)
G62118 NA non-coding upstream 587312 14577507 ~ 14578702 (+)
G62114 NA non-coding upstream 598576 14566719 ~ 14567438 (+)
G62062 NA non-coding upstream 764712 14345296 ~ 14401302 (+)
G62251 chd9,LOC106562403 non-coding downstream 98455 15297747 ~ 15298181 (+)
G62275 NA non-coding downstream 134392 15333684 ~ 15335056 (+)
G62282 LOC107575789 non-coding downstream 223915 15423207 ~ 15423573 (+)
G62368 NA non-coding downstream 864803 16064095 ~ 16066816 (+)
G62398 NA non-coding downstream 899694 16098986 ~ 16100810 (+)
AMCG00020281 slc12a4 other upstream 693469 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 933746 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 1214967 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 1280898 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 1293369 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 1383594 16582886 ~ 16604658 (+)
G62632 NA other downstream 1615082 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 2234350 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 2259852 17459144 ~ 17471869 (+)
G62895 NA other downstream 2729036 17928328 ~ 17928904 (+)

Expression


Co-expression Network