Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020297 |
| gene name | aktip,LOC107713059 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 15235683 ~ 15244984 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| aktip | Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in several processes, including early endosome to late endosome transport; endosome to lysosome transport; and protein polyubiquitination. Predicted to act upstream of or within apoptotic process and protein transport. Predicted to be located in cytoplasm and plasma membrane. Predicted to be part of FHF complex. Predicted to be active in nucleus. Is expressed in mesoderm; myotome; notochord; pronephric duct; and somite. Orthologous to human AKTIP (AKT interacting protein). |
| description |
|---|
| PREDICTED: AKT-interacting protein |
| id | name | namespace |
|---|---|---|
| GO:0006915 | apoptotic process | biological_process |
| GO:0008152 | metabolic process | biological_process |
| GO:0007032 | endosome organization | biological_process |
| GO:0007040 | lysosome organization | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0008333 | endosome to lysosome transport | biological_process |
| GO:0045022 | early endosome to late endosome transport | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0070695 | FHF complex | cellular_component |
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020297 | True | 882 | mRNA | 0.53 | 9 | 15235683 | 15244984 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020295 | NA | coding | upstream | 17653 | 15212090 ~ 15218030 (+) |
| AMCG00020296 | NA | coding | upstream | 36391 | 15166014 ~ 15199292 (+) |
| AMCG00020298 | NA | coding | upstream | 69689 | 15160597 ~ 15165994 (+) |
| AMCG00020291 | NA | coding | upstream | 244232 | 14990708 ~ 14991451 (+) |
| AMCG00020292 | NA | coding | upstream | 245253 | 14989030 ~ 14990430 (+) |
| AMCG00020299 | NA | coding | downstream | 38 | 15245022 ~ 15247620 (+) |
| AMCG00020304 | LOC106562398 | coding | downstream | 197927 | 15442911 ~ 15496323 (+) |
| AMCG00020306 | sall1,LOC106587587 | coding | downstream | 515101 | 15760085 ~ 15770745 (+) |
| AMCG00020305 | sall3,LOC106562315,LOC108274520 | coding | downstream | 526031 | 15771015 ~ 15778141 (+) |
| AMCG00020307 | NA | coding | downstream | 657528 | 15902512 ~ 15908316 (+) |
| G62185 | NA | non-coding | upstream | 201600 | 15032042 ~ 15034083 (+) |
| G62108 | NA | non-coding | upstream | 613983 | 14554856 ~ 14621700 (+) |
| G62118 | NA | non-coding | upstream | 656981 | 14577507 ~ 14578702 (+) |
| G62114 | NA | non-coding | upstream | 668245 | 14566719 ~ 14567438 (+) |
| G62062 | NA | non-coding | upstream | 834381 | 14345296 ~ 14401302 (+) |
| G62251 | chd9,LOC106562403 | non-coding | downstream | 52763 | 15297747 ~ 15298181 (+) |
| G62275 | NA | non-coding | downstream | 88700 | 15333684 ~ 15335056 (+) |
| G62282 | LOC107575789 | non-coding | downstream | 178223 | 15423207 ~ 15423573 (+) |
| G62368 | NA | non-coding | downstream | 819111 | 16064095 ~ 16066816 (+) |
| G62398 | NA | non-coding | downstream | 854002 | 16098986 ~ 16100810 (+) |
| AMCG00020281 | slc12a4 | other | upstream | 763138 | 14467800 ~ 14472545 (+) |
| AMCG00020273 | NA | other | upstream | 1003415 | 14195784 ~ 14232268 (+) |
| AMCG00020267 | NA | other | upstream | 1284636 | 13948426 ~ 13951047 (+) |
| AMCG00020241 | cdc26,LOC107743800,LOC107691734,LOC107603191 | other | upstream | 1350567 | 13882825 ~ 13885116 (+) |
| AMCG00020255 | NA | other | upstream | 1363038 | 13863477 ~ 13872645 (+) |
| AMCG00020331 | st3gal2,LOC107686287,LOC106573711,LOC107672232 | other | downstream | 1337902 | 16582886 ~ 16604658 (+) |
| G62632 | NA | other | downstream | 1569390 | 16814374 ~ 16815857 (+) |
| AMCG00020370 | NA | other | downstream | 2188658 | 17433642 ~ 17442711 (+) |
| AMCG00020371 | nutf2 | other | downstream | 2214160 | 17459144 ~ 17471869 (+) |
| G62895 | NA | other | downstream | 2683344 | 17928328 ~ 17928904 (+) |
