AMCG00020304 (LOC106562398)


Basic Information

Item Value
gene id AMCG00020304
gene name LOC106562398
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15442911 ~ 15496323 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020304
ATGGATGTAAGGTTTTATCCGTCCGCCGGTGGGAACCCCATTCCCGGAGAGCCGGCGAACCTGGATTTCTCCCACTGCCTGGGTTACTACAACTACAACAAGGTAGCTCTGGATTCCTCTGATAGTATCTTGAACTTGAGTTACATCAAAGGCATCCATAGTAAACAACCCAGGACGTGGCTGGAAGGCAAATTGAAGGCCGAGCATTGTGGTTCTGTACACGTCGGCCTTTGTAAGGACACAGAGCCGGGGCCAAGTCTGAGTGTTTCTGAAGCGCTCGTCACTGCGGTGCAAACATTCCACACGCCCAGCCTTGGAGATGAGGAGTTTGAGATCCCGCCCATCACTCCCCCTCCTGAGACTGAATCGGGGCTGGGAATGACGGAGGTGGGCTCGCCCTTCCAGGGGCTCCCTGAACCCCCGCCCACACAGGCCACCCAGTTCACCCCTCAGTTCCCCCCACAGAGCCTGGAGCTACCATCCATCACGATATCCCGCAACCTCATGGACCAAGAGGGCGCGATCCTCAACAGCAGCCTGCCCGTGAACATTTCTCAAGCACACGTGCACCAGTATCATCCCAACCACTCGATGGTCATGAGATCTGTAGTCAACATGAACAACCCTTCTGGGATGATGTCACGGAACCAGCTGACAACTATCAACCAATCCCAGCTCAGCGCCCAGCTTGGCTTGAACCTGGGTGGCCCCAACATGCCTCACACCTCCCCCTCGCCCCCTGCCAGCAAGTCggccaccccctccccctccagctCCATCAACGAGGAGGACCCTGAGGAGGGCAACCGGgtgATCGGGGAGAAGCGTCCTGCCCCGGACACCGGGAAGAAGCCCAAGAccccaaagaagaagaaaaagaaagacccCAACGAGCCGCAGAAGCCAGTCTCCGCATACGCACTGTTCTTCAGGGACACGCAGGCGGCCATCAAGGGCCAGAACCCCAACGCCACCTTTGGGGAGGTGTCCAAGATTGTGGCCTCCATGTGGGACAGCCTGGGCGAGGAGCAGAAACAGGtctacaaaagcaaaacagaagcTGCCAAAAAGGAATACTTAAAAGCTCTTGCTGCCTATCGAGCCAGTCTGGTTTCAAAGGCTGCTGCTGAGTCCGCCGAAGCACAGACCATACGTTCAGTCCAGCAGACACTGGCCTCCACCAACCTGTCCCCCTCGCTCATAATGAACACGCCCCTGTCCCAGCATCCCTCTGTCTCGGCTGCTGCTCAGGCCCTGCAGCAGGCTCTGCCCCGGGCCATCGCCCCCAAACCGCTGCAGATGCGTCTGTCCGGCAACCAGATCGTCACCTCAGTTACCGTTGCACCTCCGAACATGCCCACAAACATTCCCTCGCCCCTGATCAACCAGATGGGAGGGGCCATGGTGGGGGCGCCCCCTTCTGCGGTGGCACAGATGAGCCCACCCATGCAGCCTCCGCAGCAGCACCAGATGCAGcatttgcagcagcagcagcaacaacagcagcagcaacagcaacagcaaatgCAGCAACATTTGCAGCACcaacagctgcagcagcagcagatccaCCACCAACAGATCCAGCAACAGATGCAGCACCAACATTTCCAGCACCAtctccagcagcagctgcagcagcatcagcagcatCAGCAACATCAGCAGCATCAGCACCacttgcagcagcagcagcagcagcagcaacagcagcacctACAACAGCAGCAAATGCATCAGCAACTGCAGCACATGCAAATGCAACAATTGCATCAGCAGCAAATGCaacagctccagcagcagcagcagcaacagcaacaccaCCAACCCCACCAACCCCAGGCCTCCCCACCCCAGCACTCCCCAGGAACGCCGCAGTCTGTTGGGGGCTCTGCATCCATGGGCAGCCCCCAGCCCACCtcgcagcagcagcatcagtcCCAAATACAGGCCCAGGTGCTATCGCAGGTCAGCATCTTCTGAGCCTGAGTGAAACAAGAAGAGGAGGAAACTAATAAAAGCATCAGGCAAGGTTGCTTTTCTAAGTTGCACTTAAGAAGTGTGTAAGAATTATGTTTGACCAAGAACTGTCCATTGTTGTTGACGGCTATGCAGATATGCATAATGGGACAAAACACTGAAGCTAATTGGTCTATAAAATAGGCCATGTTatgaaaaagacaaagacaatgGGCGCGCACGcttgttgtttatattttctctaCTCTGTGGGATCGACTCGGGGCACATTACGTAAAGGACATGCTGTAATGCTCATTGGGAGACTTCTTACTCTTATTTAAGGGCAAAGCTTTATTTACAAGGGTGTCGGTTATAAGTTCTTCTGCATGAATGGACAAAAGCAAAGGGTGTGGACAGCAAGATCTGTGGAAGGCAGCTGTACTGTGTGTGGACAACCCGGATCAGAAGGTCACAAATCTTGAAGGAAACTATTTTAATGGAGGGGAACACTAGGAGGCATTGACTGGTATTACTGGTAGCCAATAATGTGTCCATGGGAAATGGGTGTTGTTTTCTCTTCACGGGACAGTATATTGTAAAGATTATGTtggggtttattttttttattcttttttttaaacatttcaagagCTTTCTCTGCATAGAAGCGGCCATCAGAACTTGCAATCCATCACTGCTTTGATTTCACTCCCAAAATACGGAGGATCAAGTGCTATCCAACTCAGCCCAGGCCTGGAAGAACTTGGAAGCAAAATTTCACATGTGCTTTTAGAGCCAGATGGAAGGATagactgaataaaaaaaaaaaaactaaaaaaaaactgctataGACCATTCAATTCTTTGTATGTCTTTAAACTGTGATGGTAATCTACTGTAGATGTCTCGAGGGGGGTAGGGAGACCCAGACGCAATTCTTCTTCCTAGTATCACATCAGGTTCATTCAGCCAGAATGCTCTCCAAAACAGATCACTCTTTTacatatttgtctttgttacCTCAGACTTTTAACGCTAtcataaattatgtttatattttttttaatttggtgtaaaaaaaaacaaaaaaaaacgaatattTTATGGTAAGTGTAAAATCACAGGCTCTATGTTGATGGTTTCAtgatcaatgtattttttaaacaatatggtTACTTGGTACCATGAActtaagaggaaaaaaaaaaaaacttgtagcaaaaaacattttgttgcaCTGTAAAAGCCAATTAAATAGGCGTGGGAACATTTAGTGCCAGCTGTAAAGAACTCctttaagaataaaaagaaaaagaaaaaaagatgtacatttttttcatatcaCGTTGTAAAGTTTTCATATGTGAAGCTTTAATATAACCATGAACTGTGGATTGCTACATCGCATAGTGcattttctgctgttttatacttttttatgaGTTATGATAGCAGTGATTaagttgtttgtattttgcttaacaaaaaatctgcttttttaTCTTGCtatagaataaatacatttcagtaaaaatcAAACTGTTTTTGAACTCTTACTAGGCAAATTTATTTGAAGATGAATTCTGCTTATTCAAGAACTAGCAGGAGACATTTCAAACCGGTGTGACATCAGCCATAATTTTGAGTCTGCTGTATGTTTCTTCTTGTGACCTTTGAAGTCTCCCTGTttggcattaaaataataattatcttttcaaaacaacttgaaaaacttaaaattaaaactctATTATTTCCAGTGGTATGTTAGCAGTAAAGGAGGATTTAAAAGGATACTTTTAAATCTTAAACTTATCAGGGAAATTCAGCTCTaggtgctatatatatatatatatttgtttgtttttgtttaagtttgCTGCACAAGTTGACCTATGTGCTGTTTTTCAGTTACTCCACCTAAAATGTCTCCATTACCCTGTTCAGATCGTAATAGACAGTGTGCAGTTTGAAGCCTCACTGACATTGATGTTTTTCCAGTAAgacattacatttccattaaagTACACAACTACCAATCCCTGTCCCTCCGCATACGTAACTGTCTATACAATATATCCTCTGAATCTGTTCATTATTGGGGGAGGGCGG

Function

NR:

description
PREDICTED: TOX high mobility group box family member 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020304 True 4074 mRNA 0.46 8 15442911 15496323

Neighbor

gene id symbol gene type direction distance location
AMCG00020299 NA coding upstream 195291 15245022 ~ 15247620 (+)
AMCG00020297 aktip,LOC107713059 coding upstream 197927 15235683 ~ 15244984 (+)
AMCG00020295 NA coding upstream 224881 15212090 ~ 15218030 (+)
AMCG00020296 NA coding upstream 243619 15166014 ~ 15199292 (+)
AMCG00020298 NA coding upstream 276917 15160597 ~ 15165994 (+)
AMCG00020306 sall1,LOC106587587 coding downstream 263762 15760085 ~ 15770745 (+)
AMCG00020305 sall3,LOC106562315,LOC108274520 coding downstream 274692 15771015 ~ 15778141 (+)
AMCG00020307 NA coding downstream 406189 15902512 ~ 15908316 (+)
AMCG00020311 NA coding downstream 507107 16003430 ~ 16011619 (+)
AMCG00020315 NA coding downstream 608045 16104368 ~ 16112905 (+)
G62282 LOC107575789 non-coding upstream 19338 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 107855 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 144730 15297747 ~ 15298181 (+)
G62185 NA non-coding upstream 408828 15032042 ~ 15034083 (+)
G62108 NA non-coding upstream 821211 14554856 ~ 14621700 (+)
G62368 NA non-coding downstream 567772 16064095 ~ 16066816 (+)
G62398 NA non-coding downstream 602663 16098986 ~ 16100810 (+)
G62432 NA non-coding downstream 919155 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 1005461 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 1037033 16533356 ~ 16535401 (+)
AMCG00020281 slc12a4 other upstream 970366 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1210643 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 1491864 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 1557795 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 1570266 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 1086563 16582886 ~ 16604658 (+)
G62632 NA other downstream 1318051 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1937319 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1962821 17459144 ~ 17471869 (+)
G62895 NA other downstream 2432005 17928328 ~ 17928904 (+)

Expression


Co-expression Network