AMCG00020307


Basic Information

Item Value
gene id AMCG00020307
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15902512 ~ 15908316 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020307
TCCAGAAGCGCAGTGCTGAGGGACAGAGGGGGATTTCACCAGGGGCCGGCACGCTGGCAAACAGAGAGGCCAGCTCATTTTCACATTACAGATCCAGAGGGGTGAGAGCATGGTTTGCCACCAGACACCCTAGCAGGAGAGCACAGGAATCTCAGCCCAGGGGGTGGCCCAGACTGTTTGCAATGGGAGATTCCTGCGATCCCGAGCAGAGCGTTCCCAGCCTGGCAGAGGACAATGGGGGAAGCCAGTCTGACAGTAGGACACAGCAGCAGCTGCCCCAGGCCTGCGCTCCAGCTCAGCAACACTACGAGCACTGCACAGATCTAGtaGATGACTGCAGCGCTGGCCCCAGCTCCACCATGACCACGAAGCAGCTGCAGGAGTACTGGCGGGAGATGAAGTCGCACAGGAAGCCCGTCAAGCTGCTGTTCGAGATTCCCACCGCCCGCATCGTGGAGCTGCCTCTCTGCAGATATGTGATGTACCAAGTGGTGGTGATCAAGTCGGGCAGCTATGATGCCAAGCAGGTGTCCATCGAGAGGCGCTACTCTGACTTTGAGCGGCTGCaccaggagctgctgcaggactTCAGCGAGGAACTGGAGGAGGTGACTTTTCCCCGAAAGAAGGTGACGGGCAACTTTGCGCCGGAAATCATCACCGAGCGCCGTGCCGCCTTCAAGGACTACTTGGCGCGGCTGTCGTTCCTGAACTGTGTGCGCCGCTCCCCAGCCTTCCTGGCCTTCTTCACCCACGACGAGCTGCGGCTGGCCCATAGCTGCCTGCGGGGGGGGCAGTATGCCCGGGCACTCCAGGTCCTGCTGCCCGTGCTGGATCTGCAGGAGAAGCTGGTGCAGCACAGCCCGGTTCTGTTGGTGCCTACGCTATGTGCTGTGCTGGTGTGCCACCGAGACCTGGACGACTCTGCCAGTGCCTTCTCCATGGGTGAGCGGGCCCTGGCGCTGACCCGCAGGGTTCACAGACACCTCTACAGGGCCCCCCTGCTGGCCACACTCATTGACCTGGGCTACGAGCTGGGCCGGCCCATTGCCGTGCTGCAGGAGGAGCTGCAGCGTCTCCAGGACAGCCTGCGAGGGCGTGTGTCCCAGCTCTCCCTCAAGGAGCTGGTGGTGCAGGAGTTCACCTGATACTGACCACACCAACGCTTCCTCCCTCCCCACGCCCTGCCCCTCACCCTGCTGCCTCAAAtagacacaggcacagacacactctGCTGGTCTCCCCTGTTTACCTTCTTACATGAGCATGAGCATGTGCGcgcacacacatacgcacatacgcacacacgcacgaacacacacacggacacaggaCACATGGACACACGGACACGCGCACATACGCTCACGCATTCTACAACTATAGCCAAGCCTTTGACCAGTTTTATGCAGGTCTGATgccaaatatttttatatatattgctgaCACGCATCATGTAAGaggcaaataaaaacagactgcaGCCTACCTTTTGGCAACAGTGATGTTTTTAGAGGGAGCACGCCTAGCACACACAGATGGCTGGAGTTAGGCCATGCGTTTCCCCCACCAAGTGCAATAGCAGAATTCAGACCGCCCGTGTCCCCCTGCAGGACAGCAACACCTGTATAATCGTGCctccctctcacacactcagCAGGCCAGCAGCTATTTGCAGATGCATACATGTACACGAAGTTAGGCTGAAGTCTTCTAGATTCACCACACGAGGGGGCTGTTGTATTTACTTAGATGTTCCCTGCAAAGCTTCAGCGCGGTGAACTGTTAAGTGCAACTTTAATTGCTTTTTGACTCCCTGGAatttttacaaataaaccaGTTAATCAAACACTTATCAATGTAAGGATTTCACAtgtgttttataatacattCCTGACTGTGCTGAAGGAAAGACAAGAATGCGGGAAGttaaatatctaaaaaaaaactgaataaaaatgaaataaaataaaaatgtaatttttcacagaTAAGCTTCTTGTTACTGATCTGCTTACTCAGATGCTGTGCACACTAATCTGAAATATAGGTGTGACAATTAGAAAAGCAGTTTATTAGTTCCCCACAGTTTGTTAAACCAATGAGCTACACATGAC

Function

GO: NA

KEGG:

id description
K17931 SNX20; sorting nexin-20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020307 True 2117 mRNA 0.54 4 15902512 15908316

Neighbor

gene id symbol gene type direction distance location
AMCG00020305 sall3,LOC106562315,LOC108274520 coding upstream 124371 15771015 ~ 15778141 (+)
AMCG00020306 sall1,LOC106587587 coding upstream 131767 15760085 ~ 15770745 (+)
AMCG00020304 LOC106562398 coding upstream 406189 15442911 ~ 15496323 (+)
AMCG00020299 NA coding upstream 654892 15245022 ~ 15247620 (+)
AMCG00020297 aktip,LOC107713059 coding upstream 657528 15235683 ~ 15244984 (+)
AMCG00020311 NA coding downstream 95114 16003430 ~ 16011619 (+)
AMCG00020315 NA coding downstream 196052 16104368 ~ 16112905 (+)
AMCG00020318 NA coding downstream 241004 16149320 ~ 16154632 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding downstream 269292 16177608 ~ 16180913 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding downstream 324265 16232581 ~ 16236548 (+)
G62282 LOC107575789 non-coding upstream 478939 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 567456 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 604331 15297747 ~ 15298181 (+)
G62185 NA non-coding upstream 868429 15032042 ~ 15034083 (+)
G62118 NA non-coding upstream 1323810 14577507 ~ 14578702 (+)
G62368 NA non-coding downstream 155779 16064095 ~ 16066816 (+)
G62398 NA non-coding downstream 190670 16098986 ~ 16100810 (+)
G62432 NA non-coding downstream 507162 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 593468 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 625040 16533356 ~ 16535401 (+)
AMCG00020281 slc12a4 other upstream 1429967 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1670244 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 1951465 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2017396 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2029867 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 674570 16582886 ~ 16604658 (+)
G62632 NA other downstream 906058 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1525326 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1550828 17459144 ~ 17471869 (+)
G62895 NA other downstream 2020012 17928328 ~ 17928904 (+)

Expression


Co-expression Network