AMCG00020308


Basic Information

Item Value
gene id AMCG00020308
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15893227 ~ 15901574 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020308
AAATCCCCGTAGATACAAATAAgtgttggtttgtgtttttttaatctatggCGACAGGTTCGTTGAGAGGACGCGGAAAAGGCCGAGCACCGTCTGGCTTCGGCTCTGAGTGATGCGCAAGGATCTCCACAGCTGCGCACTGGAAGATGAGGGATGTGTGCCCAGCGCCTGGTCCTGAGGCAGAGACAGGAGCTGGTGAGGGTGCTGAGTTGGGGTGGAGTGGAGGGGCTGGAGAGTGTGCTGGACATCCTGCTGGCCTGGGATGCTCTGCAGTGGGAGGACTATGAGAGCCTGCGGACACTGGGGCGGGCTTTATCTCTCACCACCCGTGAACTGCTGGACCTGCTGTACGCCAAGGGGGAAGCTGCCTGTGCATTGCTGCTGGCGGCTTGTAACCAGGCCCTTCCGGATGCCCAGAAAGCAGGCCTGTCCCTTGGGAGTTATGGGCCTCCCTCTGTGGTCATGGCCCCACAGCCCCCTCTTAGCAGCGCCCAGGTCCTGCAGAGGGACCGGCCCCAGGTGGTGAGGAAGCTCCGGGGCCACACTGAGGGTGTGCTGGAGACCCTCTTGGAAGCAGGCTGCTTCACGCTGTGCGACTGCGACGAGGTGCGCCTCCCCATACATACCCCCTCACAGCAGGCAAGGAGGCTGCTGGATCTTGTGAGGTCTAAGGGGGAGCCTGCTGCGGAGGTCCTGTTGTTGTACGTTCAGAAAGCAGGAAATGGAGCTGCGCTGTCCCTCCCTGAGGACAGACACCCTGCAGATGTGGTTTACCAGGCATTCCAGCACAAGCTGCGGAGCATGGTGGCGGCCCAGTCATGCTTCCTCAGCACGTACGGCGGCATGGAGAACATCTCTCTTGAAGATGTCTATACCGAGGGGGTGCTGGAGGGCTCTGGCGAGGCACAGTGCCCCCTGGGGCTGGAGGATCTGCTGGGGTCAGTGGGGACAGTGAACGAGGAGGCGGACACTGTGCTGGTTGCAGGGGAGGCTGGCAGTGGTAAAAGCACTCTGCTGCAGCGGTTGCACCTGCTGTGGGCCAACAGGGTGGCACTGCAGGACTACCTGCTGCTCTTCCCCTTCAGTTGCCGGCAGCTGGGCGCCCTGGGTTGGAAGCTGTCCCTGCGCGAGCTGCTCTTCCAGCACTGCTGCTGGCCAGATGGTGATCAGGACCTGCTGTTTCGCTTCATCTTGGACCACCCAAACCGTGTCCTCTTCACCTTCGATGGGCTCGATGAGCTTAATCCACGCTTTAGTGATGACCTCCGTCACTGCTCCCCCACCCAGCCTGCCCCCCCGTCCACCCTGCTCTTCAACTTGCTACAGGGAACATTGATGAAGGGTGTGCATAAGCTGGTGACCAGTCGACCCGAGGCGGTGGGCCCAGTTTTGAGGAAGTACGTCCGCAAAGAGGTCTCCCTGAGGGGCTTCTCTCAGGAGGGCATCGGTCACTTTGTCAGGAAGCACCACAGTGACCCTGCCATCGCTGCCCGTGTCCTAGACTCCCTGCAGGCCAACACTGCCCTGCTGGGCATGTGCCATATCCCTGTCTTTTGCTGGATTGTGTCCAGGTGCTATGAGGAGCTCCTGGGGCGAGGGGTGGGCAGCCCGCAGACCATTACGGATGTCTACCTGATGATCCTGCAGCACTTCCTACAGCATTCCTGCCCTCAGCAGTGCCTCCTTGGGCCAGATTGGTTGCAGGTTCATGTGGACACAGTCCTGCATCTCGGCCAGCTGGCCCTGTGTGGCCTGGTGTCCTCCTGTTACGTTTTTTCAGCTTTGCAGCTGCAGCAGTACAGTGTGACCGAGGAGGACATCTCCACCGGCTTTCTTGTTCACAGCAGGAACCTCACCCCCCCAGGCAGCCCTCACTACGAGTTCCTGCACGTCACAGCGCAGTGCTTCTTTGCTGCTCTCTTCATTGTCctgaacaacaatatagagaattCCACCATCCCCAAACTCTTCCACCCACGGAATAAGCCACTGTCTGCCCTGGCCAGCATGTGCCTGGCACCCTGCCTGCACCCCAGCTCCGTCGGGGACGCTGGTGCTGAGGGGGACATCCAGGCAGCAGAGACGATCAACCTGCAGATGACTGGCGCCTTCGTGGCCGGGTTGCTCTCTCGACGCCACTGTGACCTACTAGCTCGGTGCTCCCTGGGCCCCATCCTGGACAAGAAGCGCAAGCAGGTGGTGAAGAGCCTGTGCaaagggacacagagacacttcaGGTCCATCCCTCCTCCTGTGGAAGGAGAGAAGAAGAGCATGCACGCCATGCCAGGGTTCGTCTGGCTGGTGAGGTGCATCTACGAGATGCAGGACTGTGGCCTAGCCAAAGAGGCCGTGGCCCGGCTGGACGTGGAGCACCTGAAGCTCACGTACTGTGGTGTGGGCCCAGTGGAGTGCAGCGCGTTGGCCTTCGTCTTGCAGCACCTCAGGGCTCCCATTGGGCTGCAGCTGGACTACAATTCGGTGGGCGACGTCGGGATTGAGCAGCTGCTGCCCTGTCTGGAGATCTGTCAGTCAATTTACCTGCGCCATAATAACATTTCTGATGTGGGAATCTGCAAGCTGATCGATAAGGGAATCCAGTGTGAGCACTTTCAGAAAATTGCGCTGTTTAACAACAATCTGACAGACGAgtgcacaaaacattttgcaaaactCCTCAGAATGAAGAAGAATTTTCTCTCATTGAGGCTGGGCAACAACCACATCACAGCAGCCGGAGCGGAACAGCTGGCAGAGGGTCTGAGGGAGAGCCGGTCTCTGCAGTTCCTGGGGCTCTGGGGCAATAAAATTGGAGACAGAGGCACAGAGGCACTGTCTCGAGCCTTGCAGGACAGTCCCAGCCTGGTGTGGCTGAGTCTGGTGGACAATGGGGTGGGCAGTGCTGGGGCACGGGCTCTGGCTGCAGTGATTGAAAGGAGCAACACCCTGCAGGAGCTCTGGTTAACCAAGAACTCCATTAGCAGAGATGGGGTGCAGCACCTGCTGGAAGCGCTGCAGAAGAACACCAGTGTGAAGTCTATCTGGTTGAGAGGTAACAGTCTGACTGCAGATGAGGAAGAGGAACTCGGCCAGGTGGAAAGCCGGCTGACATTCTGAGAGCGGCTCTTCTCCATCAGGGGCATTTTTACTCTTCCATttctgtaaacatttattttctccatgtctgaattttattattaatttataggGTGAACTGATATCATTTTACTCCAGCTTATGTCCAGATGGATTCCTCCATGGTCTGGGTGGTTGCTCTCAGATCTCagctctattattattattattattgttgttgttgttgatgttgttattttgttgaaGTTGCTGCCTCAACCCCAAGGCATgatttgtaattgtatgtatgaGTTGGTGGTTGTATTATTTGAAGCTGGATAAATGTTCTTTTATCTTATCGTGATTTATCATCAGTGATCATCATTGAGCTGTGTGAATAAAAGGTGCGGATCAGTTCCCGAAATGTCATGATGCTACTAatcaaagaacaaaaataaatgaatgaatatgta

Function

GO: NA

KEGG:

id description
K10165 NOD2, CARD15; nucleotide-binding oligomerization domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020308 True 3548 mRNA 0.56 11 15893227 15901574

Neighbor

gene id symbol gene type direction distance location
AMCG00020310 NA coding downstream 1179 15868506 ~ 15892048 (-)
AMCG00020303 NA coding downstream 572951 15308859 ~ 15320276 (-)
AMCG00020301 chd9 coding downstream 585731 15270793 ~ 15307496 (-)
AMCG00020302 NA coding downstream 623801 15269069 ~ 15269426 (-)
AMCG00020300 NA coding downstream 627465 15246273 ~ 15265762 (-)
AMCG00020309 NA coding upstream 20719 15922293 ~ 15933678 (-)
AMCG00020312 NA coding upstream 110491 16012065 ~ 16036730 (-)
AMCG00020313 papd5 coding upstream 165839 16067413 ~ 16078705 (-)
AMCG00020317 NA coding upstream 187382 16088956 ~ 16097553 (-)
AMCG00020323 LOC107577405,LOC104961177 coding upstream 556005 16457579 ~ 16469287 (-)
G62283 LOC107575789 non-coding downstream 469653 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 859151 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1125664 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 1491925 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 1979061 13913172 ~ 13914166 (-)
G62475 NA non-coding upstream 578956 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 767323 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 778282 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 995296 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 1085745 16987319 ~ 16989284 (-)
G62061 NA other downstream 1560820 14330522 ~ 14332407 (-)
G62011 NA other downstream 1761658 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 2058498 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 2080224 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 2084894 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 197326 16098900 ~ 16102739 (-)
G62409 NA other upstream 217415 16118989 ~ 16120153 (-)
G62415 NA other upstream 351214 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 370877 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 714749 16616323 ~ 16624970 (-)

Expression


Co-expression Network