AMCG00020309


Basic Information

Item Value
gene id AMCG00020309
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15922293 ~ 15933678 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020309
GTCCCCTCTGACGATGGCTGCAGAGAAGGGATTGGCGATGAACATTACCGCTTGGAAGTGGCCCTGCCCCCTGAGAAGATGGATGGTTGCTGCTCCGAGGAGAAGCAGGACCGAGAGAGCCAGGTGCCGGGCGGACCCAAAAAACAGCTGAAGTTTGAGGAGTGGACCTTCACTCTGTATGACTTTGATAACAACGGCCGGGTCACCAGGGAGGACATCACCAGCCTGCTGCACACCATCTACGAGGTGGTCGATGCCTCAGTGAACCACTCGCCCAGCACCAGCAAGACCCTGCGCGTCAAACTGTCTGTGGCGCCGGACTCCAGCCAGAAGTGGAAGATCTCTCCCCAAAACAGTGCAGACACTCCACACTCCAAACAGAGAACAGAGAACAAATGTTCTGAAGACCCAAGAAGTTCTGACAAGAAATCCAGAGCCCCCCTCCGGCGTCACCATAGTGACCATCACGCTCAGCAGGGCTGCCAGCGGCACTGTGTGGATGAGAACCTGGAGCGTCGGAACCACTACCTGGACCTGGCCGGCATAGAGAACTACACTTCCCGATTCGGAGCTGGCCCCACTGCAGAGCCAGCCAGGGTGGAGCACTCGTCTCGAGCTGCCAACCAGGCCAGGTCTCGGTCCCACGAGCCGGAGCACGGCCACTCTTCGCACCACCGCCGCTCGCAGGCCCTGGACAGTGCTGGGCACACTACTGCCCCCCAGGAGCCCCTGTGCCCTCGGGCACTGGAGCAGGTGCCCCGGGCGCGAGGTCAGGACTCTGGGAGGCACGCGGTGCGTTCACCCAAGACACAGGGCAGGATGCCGCCCTTGCAGCAGCACGGTGGGAGGGCTGTGAGAAACCGGGGCGCTCCCCCCGCCCCTGCCCCACCCCTGCTGCTCAGCCAGAATCTGCCGGTGCCACCCCAGCCTTCTGCACCCTACAAGAGGCACAAGCAGCGAACCAAGGAGGGACAGCCAGCCTACCGTGCTCTGGCCGGCCCCCTGCCCTCGATGGAGAAGGAGCACGTGCGGGACCTGCCTGGCTTGCTTCTGTATGAGGGGGGCCTGGGCCAGGTGGTGCAGCGGCACGAGCACCATCACCACCACGAGCATcaccaccactaccaccacTTCTACCAGTCCTGAGCACCTGCCACCCACTGCCCGCCGCGCAGACTTACAGTGCAGCCCCTTACCAGCAACATGACACGAGCATTTCCGTTAACAAAAAGTAAGACCAGATGGATgttcttgtttggttttgtttgaaagAATGATATGTGTCTTGAAGGAAATGCAGTTCTAGGGATTGAAAGAAGATGGGGGGTATGACTTGCCAGGCTTACAGGGACCCTTGGAGTGACTTTGCTTTGCTGCGTGTTGTCAGTGCTTTAAGGCAGTGAGTGGAGGACAGTAGAAATTggagcaaaaacaaatctaaaagtTGCTGAGTGGGGAGACTGTTTGCCAGACCCTTCCTACAACTGGACGCTGACCTCAGTGGGCGTCCTCACCTCTACTCCTTGGAGTGGCCAATGGAGGGACAAATGGACACTGACTTGAAAGGTCTACATCCTACCAGAAAACCtaaatgaatgtatgtgtgAGGAATGGCCTGGGCTGAGGGGTGCGGGGGGGGAGGGGCAGATGCTGGACTGTGGGAGGGCTGCCTCCCCTGAGCTCCGCAGGTCCCCAGATTGTCGGCCCTTCAGTCTCTGGTGGATCTTGTGCGGCTACCATAGGAAGCCACTTTGAAAGCACTTCCCGGTGTAGCTGCTTTTCACAAACCTTTTCCATCAGAAACTGGACGTTCACTGTGGGAATCTGGACACATTCTTATAAAAAGAAGGAACAagaacgacaacaacaaaaaacaagactcaAAACAGCTGCTACCtctagtattattatgattattgttattataattattcagatattttcattaacaaatatttaatatgccacatgg

Function

GO:

id name namespace
GO:0009653 anatomical structure morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
K03213 NKD; naked cuticle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020309 True 1972 mRNA 0.56 7 15922293 15933678

Neighbor

gene id symbol gene type direction distance location
AMCG00020308 NA coding downstream 20719 15893227 ~ 15901574 (-)
AMCG00020310 NA coding downstream 30245 15868506 ~ 15892048 (-)
AMCG00020303 NA coding downstream 602017 15308859 ~ 15320276 (-)
AMCG00020301 chd9 coding downstream 614797 15270793 ~ 15307496 (-)
AMCG00020302 NA coding downstream 652867 15269069 ~ 15269426 (-)
AMCG00020312 NA coding upstream 78387 16012065 ~ 16036730 (-)
AMCG00020313 papd5 coding upstream 133735 16067413 ~ 16078705 (-)
AMCG00020317 NA coding upstream 155278 16088956 ~ 16097553 (-)
AMCG00020323 LOC107577405,LOC104961177 coding upstream 523901 16457579 ~ 16469287 (-)
AMCG00020325 lonp2 coding upstream 538906 16472584 ~ 16473662 (-)
G62283 LOC107575789 non-coding downstream 498719 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 888217 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1154730 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 1520991 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 2008127 13913172 ~ 13914166 (-)
G62475 NA non-coding upstream 546852 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 735219 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 746178 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 963192 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 1053641 16987319 ~ 16989284 (-)
G62061 NA other downstream 1589886 14330522 ~ 14332407 (-)
G62011 NA other downstream 1790724 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 2087564 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 2109290 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 2113960 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 165222 16098900 ~ 16102739 (-)
G62409 NA other upstream 185311 16118989 ~ 16120153 (-)
G62415 NA other upstream 319110 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 338773 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 682645 16616323 ~ 16624970 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034922 nkd1 coding NC_007118.7 CM002891.2 37582281 ~ 37622370 (-)