AMCG00020311


Basic Information

Item Value
gene id AMCG00020311
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16003430 ~ 16011619 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020311
atgggcaagaaacacaagaaacacaagTCGGAGAAACATACCTACGGAGCCTTGCATGGGACTGGACGCTCTCTGTTCGTGTCACACCCAGGGGAGTATGTGGAGAAGCCGCTGAAGCTGGTCCTCAAGGTAGCCGGGACCGAGGTGACCGAGCTGTCCACCGGGAGCTCCAGCCACGACCCCGCCGCCTTCGACGACAAGGCCGATCACGACAAACACaaggacaagaagaagaagaaaaaaaagaagggagagaaagagaaacacagcCCCGACCCCGCtgtggaggagaagaaaaagaaaaagacaacCAAGAAGAAGAAAGGTCAGCAGTCGATGGAGACGGATGCAGACGAGCAGGAGAGAAGCCAGACCCCTGTCAGAGCAGAGCTGTCCCCAGACAAGCACATCAGCTCCCCCATGGCCAAGATGGAGGGTGAGTCCCCCGCAGTCTGTGTGCGCCCGTGTCGCAGCCTTCCTGCaggctctccctctcccaccctGACCCGTCTCACCCTCCCGCTGCTCAGGGAGTCGGCGAGAGGCACGGATTTCATACGGCACGGAGATTCGCTTTCCAGAAAGAGCTGTCCCCCCTGCAGGAAGCTCTCACCCAGCTCATCAGGCAGCTCCAGAGACTTCATCGCGCCTGGGTACTCCCTGATCATTAAGCGGCCCATGGACTTCAGCACCATGAAGGAGAAGGTGAAGAGAGAGGAGTACCAGTCCCTGGAGGAGCTCAAGGCGGATTTCAAAATCATGTGCGAGAACGCGATGATCTACAACAAGCCGGAGACCATCTACTTTAAGGCTGCCAAGAAGTTGCTTCACTCCGGGATGAAGATCCTGAGCCAGGAGCGTCTGCTGAGTCTGAAACAGAGCATCGAGTtcatggccgacctggagtgtaccAACAAGCAGGGTGAGCTGGGGGATGCGGCAAAGGAAGGAGGCCCCAGCACGGAAGAGCCCAAAGATGGAGAGGAGCCCATGGACACCTCTGAGCCCTTGAAAACACCCAGCAAGGCAAATAAGGACAGCAAGAGGCCCGACAGGGACTCCAAGGAGGATGTGGAGAGGAGCAGCAGCCTGGCggagaaggagctggagcagatcCAGAAGCTGATCGAGGAGTCGGGGGGCAAACTGACCAGCAGAGGGTTCCAGAGTGAGCTGGAGGTGAGGCTGGTAGCCACACCAGGTGGAGGGGAACATGGGTGGGGCAGGAAGGGCGATTCTCTAGAGGATAGTATGCAGTTTGAGAGACGGAAGTCTGATGGGACCACCACGCTGGGCATCCTAAACCCAGCTGACTTGGCAGTGGGAGAACCAGGATACTGTCCTGTGAAGCTAGGCATGATGATGGGCCGGCTGCAGACTGGCATAAACACCCTGCAGGGGTTTAAAGAAGACAAAAGGAACAAGGTGACACCAGTGTCCTACATGAATTACGGGCCGTTCAGCTCTTACGCTCCGATTTATGACTCCAGTTTTGCCAACATCAGTAAAGACGATTCGGACTTGATCTACTCCTTCTATGGGGACGAGCCCAGTGTCCAGGGCTCTCAGAGcatcCAGGAGTTCCTGTCGAAGGCAGACCAGTACATGAGCAAGATGGCAGACAACATAATCGAACCCGAGGCTGGCTGCAAGGACAGCCTGACTGCGCTAAGCTCTGTGGCTGGCTTGGACCTCGAACCCCAGCCCTTGGACTCTGAAGAGGCTCAAAAGTTCCAGAAAAAGCTGGACGAGACGACGCTGCTACTGCGGGAGCTGCAGGAGGTCCAGAACGAGCGGCTCAGCGCCAAGCCTCCCCCCAACATCATCTGCCTGCTCGCCCCCAGCGCCAAAGAGCTGCTGCTGGCGGAGAAGGTGACCGGAAACCTGAAGGAGCTGGCGAGCCGCGTGTCCCCGGGCGACCTCGCCAGCCTGTACGGCATCAGGAAGGCTATGGGGATCTCCCTGCCAGCCGGGCTGCAGGAGGATGGCCTCATCGACCTCACCACAGCTGCTGCGGAGTCTGTGGGGGTGTGTGCTGGCGGACAAGAAGAGGTCCCTGTGATATAA

Function

GO: NA

KEGG:

id description
K11723 BRD7; bromodomain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020311 True 2067 mRNA 0.58 16 16003430 16011619

Neighbor

gene id symbol gene type direction distance location
AMCG00020307 NA coding upstream 95114 15902512 ~ 15908316 (+)
AMCG00020305 sall3,LOC106562315,LOC108274520 coding upstream 225289 15771015 ~ 15778141 (+)
AMCG00020306 sall1,LOC106587587 coding upstream 232685 15760085 ~ 15770745 (+)
AMCG00020304 LOC106562398 coding upstream 507107 15442911 ~ 15496323 (+)
AMCG00020299 NA coding upstream 755810 15245022 ~ 15247620 (+)
AMCG00020315 NA coding downstream 92749 16104368 ~ 16112905 (+)
AMCG00020318 NA coding downstream 137701 16149320 ~ 16154632 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding downstream 165989 16177608 ~ 16180913 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding downstream 220962 16232581 ~ 16236548 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding downstream 242874 16254493 ~ 16274574 (+)
G62282 LOC107575789 non-coding upstream 579857 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 668374 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 705249 15297747 ~ 15298181 (+)
G62185 NA non-coding upstream 969347 15032042 ~ 15034083 (+)
G62118 NA non-coding upstream 1424728 14577507 ~ 14578702 (+)
G62368 NA non-coding downstream 52476 16064095 ~ 16066816 (+)
G62398 NA non-coding downstream 87367 16098986 ~ 16100810 (+)
G62432 NA non-coding downstream 403859 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 490165 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 521737 16533356 ~ 16535401 (+)
AMCG00020281 slc12a4 other upstream 1530885 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1771162 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2052383 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2118314 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2130785 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 571267 16582886 ~ 16604658 (+)
G62632 NA other downstream 802755 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1422023 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1447525 17459144 ~ 17471869 (+)
G62895 NA other downstream 1916709 17928328 ~ 17928904 (+)

Expression


Co-expression Network