AMCG00020313 (papd5)


Basic Information

Item Value
gene id AMCG00020313
gene name papd5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16067413 ~ 16078705 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020313
ATGGCTGAGAAAAATTTCAGCCCAGGGGAACCTGACAGCGTACCCCTGGATCCTGCATCTCTTGTGCGAGCCTGCGTGTGCTGTCATGCCGATGGCCCTGTGCCCAATTTTATGTCGAAGCAACTGAGAGCCGGCTGGCTCTATGAATCGCCAACCTCCTCAAGGTGCTTCCTGGAGTCGTGTGGCCATGAGATACGCTGCCGGACAGTTGCCTCCGcccccgtccccgtccccaCCTCGGACGCAGAGCATCGGAGTAGTGCAGCCTTGGCTGTGGTGGGGTTCCGCTGTCCAGAGGGGCCCTGTATTCATGCAGAAATCATCCTGAAAACTTTCTGCTCCATGGTGTTAGTGACAGGAAGCTCGCTCCACGAGGAGATCAAAGACTTCTACGAGTACATGTCGCCACGACCAGAGGAGGATAGGATGAGGATGGAGGTGGTGAAGAGGATAGAGGGTGTGATCAAGGACCTGTGGCCCAGTGCTGACGTAAGGCTGCCTGTTGGGGACTGCCCTCCCAGTGAGGGGACTGGTGACATTGATCTGGTTGTGTTCGGGAAGTGGGACACCCTGCCACTGTGGACTCTGGAAGAAGCCCTTCGGAAACAGAATGTGGCCGATGAGAATTCGGTCAAGGTGCTGGACAAGGCTACGGTTCCTATTATCAAGCTGACGGACTCGTACACTGAGGTGAAAGTGGATATCAGCTTCAATGTGCAGAATGGGGTGAAAGCTGCGATGCTCATCAAAGACTTCATAAAGaaATATCCAGTGCTTCCTTACTTGGTGCTGGTGCTGAAGCAGTTCCTGTTACAAAGGGATCTGAATGAAGTGTTTACAGGGGGGATTGGCTCTTATAGCCTGTTCCTCATGGCGGTTAGCTTCCTACAGATGCATTACAGGGAAGATGCCAGCAGTCCCAATGCCAACATCGGCGTCCTTTTAATAGAATTCTTCGAGCTCTACGGACGACACTTCAACTACCTGAAGACGGGCATCCGGATAAAGGACGGGGGATCCTATGTGGCCAAGGACGATGTTCAGAAGAGCATGGTGGATGGATATCGGCCGTCCATGCTGTACATCGAGGACCCCCTCCAGCCAGGCAATGACGTGGGACGCAGCTCTTACGGTGCTATGCAGGTGAAACAGGCCTTCGACTACGCCTACGTGATCCTCAGCCACGCAGTCTGCCCCCTCGCCAGGCACTACCCCAACAATGAGTCCGAAAGCATCCTGGGCCGAATCATCCGCGTGACGCAGGAAGTGGCGGAGTACAGGGACTGGATCACCAAGAACTGGGGTCCTCAGTCTCAGAACGACTCCTCCTTTAATGGGAATGACGTGATGCTCCTGGTGGAGCCCCAGCAGCTGGacaaatgcaacaacaacatCTCAGATGAAGTGGTCATGCTGCCGCCATCACGAAGCAATCACTCCTCTTCCTCCGGGCcgccctcctccccctcctcctcatcctcgccttcctccccctcctccacagCCTCAAGCTCCAGTGACGCAGACTCGGACGGCACCCCATGTAAAACTGTGAAACCCCTCAGCAGAGGGTCCAGCTCCCACAGAGATCCGGCAGGGGGAGCCACCCCTTACAGAGCACAGAGCCATTCCTCCTGCAGCCCTGCCAGCAACATCAACAAGGGGAAGcaTGGAACGAGACAGTTTCGCTTGTCTTCGAGCAAAAGCACTCACGGGCAGCAGAGCTCTGGACAGTTGAGCGTATCGGGGAGCAGTAAAACACAGCAAGGTGGCAAGACGCATCACCAGTACGGTGGTAAGAAGAGGAAACCCCAGCGGGAGGCGGCACACGAGGACCTCTGCAGATAG

Function

NR:

description
PREDICTED: non-canonical poly(A) RNA polymerase PAPD5

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020313 True 1848 mRNA 0.56 13 16067413 16078705

Neighbor

gene id symbol gene type direction distance location
AMCG00020312 NA coding downstream 30683 16012065 ~ 16036730 (-)
AMCG00020309 NA coding downstream 133735 15922293 ~ 15933678 (-)
AMCG00020308 NA coding downstream 165839 15893227 ~ 15901574 (-)
AMCG00020310 NA coding downstream 175365 15868506 ~ 15892048 (-)
AMCG00020303 NA coding downstream 747137 15308859 ~ 15320276 (-)
AMCG00020317 NA coding upstream 10251 16088956 ~ 16097553 (-)
AMCG00020323 LOC107577405,LOC104961177 coding upstream 378874 16457579 ~ 16469287 (-)
AMCG00020325 lonp2 coding upstream 393879 16472584 ~ 16473662 (-)
AMCG00020324 NA coding upstream 395568 16474273 ~ 16479633 (-)
AMCG00020328 sf3b3 coding upstream 455991 16534696 ~ 16548548 (-)
G62283 LOC107575789 non-coding downstream 643839 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1033337 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1299850 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 1666111 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 2153247 13913172 ~ 13914166 (-)
G62475 NA non-coding upstream 401825 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 590192 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 601151 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 818165 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 908614 16987319 ~ 16989284 (-)
G62061 NA other downstream 1735006 14330522 ~ 14332407 (-)
G62011 NA other downstream 1935844 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 2232684 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 2254410 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 2259080 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 20195 16098900 ~ 16102739 (-)
G62409 NA other upstream 40284 16118989 ~ 16120153 (-)
G62415 NA other upstream 174083 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 193746 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 537618 16616323 ~ 16624970 (-)

Expression


Co-expression Network