AMCG00020314 (znf423,si:ch211-216l23.1,LOC107738741)


Basic Information

Item Value
gene id AMCG00020314
gene name znf423,si:ch211-216l23.1,LOC107738741
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16177608 ~ 16180913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020314
ATGCTGGGGGACAGCTGTGATCTGGGCATGGGAGAGGAAGAAGGGGGCACGGGGCTGCCTTACCCATGCCAGTTCTGTGACAAGTCCTTCAGCAGGCTGAGTTACCTGAAGAGACATGAGCAGATCCACAGCGACAAGCTGCCCTTCAAGTGCACCTACTGCAGCCGGCTCTTCAAGCACAAGCGCAGCCGTGACCGCCACGTCAAGCTGCACACGGGTGACAAGAAGTACCACTGCCATGAGTGCGAGGCTGCCTTCTCACGCAGCGACCACCTGAAGATCCACCTGAAGACGCACAGCTCCAGCAAGCCCTTTAAGTGCACCGTCTGCAAGCGAGGCTTCTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGCCcacaagaagaacaaggagcACGTGGCGCGGGCTGAGAAGGAAGTGGGCAAGAAGGATGACCTGTACATGTGCGATTACTGCGAGGAGACCTTCAGCCAAACCGACGAGCTGGAGAAGCACGTTCTCACACGCCACCCTCAGCTCTCTGAGAAGGCTGACCTGCAGTGCATCCACTGCCCTGAGGTTTTCTCTGACGAGGGCTCCCTGCTGAGCCACATCGACCAGACCCACGCCAACAAGAAGCACAAGTGCCCAATGTGCCCGGAGCAGTTCTCCTCTGTGGAGGATGTCTACTGCCACCTGGACACCCACCGTCAGCCTGACTCCAGCAACCACAGTATCAGCCCCGATCCTGTGCTGGGCAGCGTTGCCTCCATGAGCAGCGCCACTCCTGACTCCAGCGCATCTGTAGAGAGAGGCTCCACCCCTGATTCCACCCTGAAGCCCTCCAGGGCCGCCCGGAAGCTGGTCTCTTCTGAGCGAGAGGACAGTCAGAACTGGACAGCCAAAGTCACCTACAGCTGCCCCTACTGCTCCAAGCGGGACTTCAACAGCCTTGCAGTGTTGGAGATCCACCTCAAGACCATTCATGCTGACAAGCCCCAGCAGAGTCACACGTGCCAACTGTGCCTGGACTCCCTGCCCACGCTGTACAACTTGAATGAGCACGTCCGCAAGGCACACCGCAACAGCAGCGCCTTCCCAGTCCTGCAGTTCAGCAACGTCTCCGCCTTCCACTGCAACTACTGCCCAGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATCCGAGTCACCCACTGCCTCCCCGGTGTCGCCTCCACCACCCTGGAGGGCAACCATGCCTTCTTCTGCAACCAGTGCTCCATGGGTTTCCTCACCGAATCCTCCCTTACCGAACACATCCAGCAGACCCACTGCAACGTGGGCAGCTCAAAGCTGGAGTCCCCCGTCATGCAGCCTTCCCAGTCCTTCATGGAGGTCTACTCCTGCCCCTACTGCACCAACTCGCCCATCTTCGGCTCCATTTTGAAACTCACCAAGCATATCAAGGAGAACCATAAGAACATCCCACTGGCCAACAACAAGCGCTCCAAGGCAGACCACAGCCCTGTGTCGTCTGATGTTGAGATATCTTCCCCGAAGCGGCAGAGACTGGCTGCCAGTGCTACCCCAGGCTCTAACGGGGAGTATCCATGCAACCAGTGTGACCTCAAGTTCGCCAGCTTTGAGGGCTTCCAGGCTCACCTGAAGTCACatctggagctgctgctgaggAAGCAGTCCTGCCCGCAGTGCAAAGAGGACTTTGACTCACAGGATTCCCTTCTGCAGCACTTGACCGTCCACTACATGACCACGTCCACCCACTATGTGTGCGAGAGCTGCGACAAGCAGTTCTCCTCAGTGGATGACCTGCAGAAGCACCTGCTGGACATGCACACCTTCGTCCTGTACCACTGCACCCTGTGCCAGGAGGTGTTCGACTCCAAGGTCTCCATCCAGGTGCACCTGGCTGTCAAGCACAGCAACGAGAAGAAGATGTACCGCTGCACTGCCTGCAACTGGGATTTCCGCAAGGAGACAGACCTCCAGCTGCACGTGAAGCACAGCCACCTGGGCAACCCGGCCAAGGCCCGCAAGTGCATCTTCTGCGGGGAGATGTTCAGCACAGAGGTGGAGCTGCAGTGCCACATCACCACCCACAGCAAGAAGTACAACTGCCGCTTCTGCAGCAAGGCCTTCCACGCCATCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCACTGTGTCTTCGACGGTGGCAATGGCAGCCAGAATGGAACACCCAACGGTGTGCCCCCAGTAGCCAAGAGGGCTGCAGAGGCTCCTGACCTGCAGAACATGCTGCTGAAGACTCAGGAGACGGTGAACAGCCACGAGGCCAGCGAGGATGATGTGGATGCGTCTGAGCCCATGTACGGTTGTGACATCTGCGGTGCCGCCTACACAATGGAGGGGCTGCTGCAGAACCACCGCCTGCGGGACCACAACATCCGGCCCGGCGAGGATGACTGCTCACGCAAGAAGGCTGAGTTCATCAAAGGCACCCACAAGTGCAATGTGTGCTCACGGACCTTTTTCTCGGAGAACGGGCTGCGGGAGCACATGCAGACCCACCGCGGCCCCGCCAAACATTACATGTGCCCCATCTGTGGGGAGCGCTTCCCCTCGCTGCTCACTCTCACCGAGCACAAGGTGACGCACAGCAAGAGCCTGGACACCGGCACCTGCCGCATCTGCAAGATGCCCCTGCAGAGTGAGGAGGAGTTCATCGAGCACTGCCAGATGCACCCAGACCTCCGCAACTCCCTCACCGGGTTCCGTTGCGTGGTGTGCATGCAGACCGTCACCTCCACCCTGGAGCTCAAGATCCACGGCACCTTCCACATGCAGAAACTGTCCACCAACTCTGCCTCTTCCTCCCCCAACGGCCATCTGCAGAAGCTGTACAAGTGCGCCCTGTGCCTGAAGGAGTTCAAGAACAAACAGGACTTGGTCAAGCTGGATGTGAACGGGCTGCCCTATGGGCTGTGTGCAGGATGTATGAGCAGAGGCACCAACGGCCAGTCCTCAAGCAGTGTGGGTGGGGGAGGGCCGGGGCAGGGGGTCGGGGTGTCACAGGATCCCGGAGAGAAGCCCCTGGCTGGCCTGCGCTGCCCGGAGTGTGCAGTGAAGTTTGAGAGCGTAGAGGACCTGGAGAGCCACGTGCAACTAGACCACCGGGAGATGACGCCCGAGACCAGCAACCAGAAGAAGGTGGCAGACGCCTCTCCGGCCCCCAAAGTGAGTACAGAGTCCCAGAGGAGATCTGGATTTCAAATAAATCGATTAATTCAACGATCAATGTGCCTCTCCGATGACCCACAGTTGTCTGatctgtga

Function

symbol description
znf423 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in nephronophthisis 14. Orthologous to human ZNF423 (zinc finger protein 423).

NR:

description
PREDICTED: zinc finger protein 423 isoform X3

GO: NA

KEGG:

id description
K22870 ZNF423; zinc finger protein 423

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020314 True 3306 mRNA 0.59 1 16177608 16180913

Neighbor

gene id symbol gene type direction distance location
AMCG00020318 NA coding upstream 22976 16149320 ~ 16154632 (+)
AMCG00020315 NA coding upstream 64703 16104368 ~ 16112905 (+)
AMCG00020311 NA coding upstream 165989 16003430 ~ 16011619 (+)
AMCG00020307 NA coding upstream 269292 15902512 ~ 15908316 (+)
AMCG00020305 sall3,LOC106562315,LOC108274520 coding upstream 399467 15771015 ~ 15778141 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding downstream 51668 16232581 ~ 16236548 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding downstream 73580 16254493 ~ 16274574 (+)
AMCG00020321 cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943 coding downstream 112581 16293494 ~ 16299985 (+)
AMCG00020322 NA coding downstream 239410 16420323 ~ 16434057 (+)
AMCG00020326 siah1,LOC106573709 coding downstream 269923 16450836 ~ 16452635 (+)
G62398 NA non-coding upstream 76798 16098986 ~ 16100810 (+)
G62368 NA non-coding upstream 110792 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 754035 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 842552 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 879427 15297747 ~ 15298181 (+)
G62432 NA non-coding downstream 234565 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 320871 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 352443 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 366823 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 464025 16644938 ~ 16646261 (+)
AMCG00020281 slc12a4 other upstream 1705063 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1945340 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2226561 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2292492 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2304963 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 401973 16582886 ~ 16604658 (+)
G62632 NA other downstream 633461 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1252729 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1278231 17459144 ~ 17471869 (+)
G62895 NA other downstream 1747415 17928328 ~ 17928904 (+)

Expression


Co-expression Network