AMCG00020317


Basic Information

Item Value
gene id AMCG00020317
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16088956 ~ 16097553 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020317
GCGGCCGCTGTGTGCGCACATGGCCGGGCGCAGGCTCAGAGACACGGCGTGAGACGGAGACTCTGTGTGTATTAACAAAGTTAAGATTCACGTATCCCATCTTGGGGCCAGCAGGCAATGGGAAAAAGCAAGAATAAGAAGTTCAAGCGGCCGGCTTTCGGTACGACCGGGCTCCCCGTCCCTGTCTCCCCGAGAGAGGCCGACGAGGACGGAGAAGTGGACTCTCCGGCCGGCGAGCTGCTGGAGAAGCTGCAGAGCCCCAGCCCTGATGTGCGAGAGTGCGCTTGTGCCAGTATCTCTCGGATGGTGCAGCAGAGTCAGACCATCCCGGCGTTCCTGCAGCGCGACGCTGTGCGCTGCCTCGGCCCCCTGCTGCTGGACCGCAGCCTGGCTGTGAGGGAAACTGCCACCGGGGCGCTCAGAAACCTGAGTGCGTGTGGCGGGTACGACgtgtgtgaagacatggtgAAGCAAGACATCCTGACGCCCCTGACCGCCCTGCTGCGAGAGTGCTGCACCGCGTTTGACTCCAGCACCACTCCCTCACCCACGTCTAATAAAACCCAGAGGAAGTGTGTGGAGGACATTGCCAATGAGGCAGTGAACCTGCTGTGGAACCTGTGTGAGAGCAGCAGCCTGGCACTGTCTGTATTCAATAAGCAGGGGCTGCTGGAGTTGCTGATGCTGTGTCTGCAGAgacacccccaacacacagagcTGGCCGTGTCTGCGGCACACTGCCTGCAAACGGTGACCGAGGACAACGCGGAGCTGCTGGGGGCCGTGACGCCGGCCATGTTGCAGGGGCTGGAGTCTGTGCTGCTGTCCTCACAGCCCTCCCTCTCGCACACGCTGCTGAGGATACTGATCGCAGGTTCAGTGTGGAACCTGAAGGGGGCCCTCCCCTCTGGGCAGCAAGCACAGACCCTGAATGCCCTGATCGCCACCCTGACCGCCAGTCTGGAGCTTGACTCGGGCCAAGTCATCATTGAGCTGCAGGAGGCTGAGGCCAGGCAGAGGACTGAGGCGGTGGACGGCACTGTGGCAGGGGAGcaggtggtggtggaggagatggaggaggaggagaagggttTGAGAAATGGGAACGTGCCCATGAGGAGTGATGACCTCTCCGACCTGCTGCCAGTGGAGAACGAGGAGCTGAGGGAGGCCTCTGCACTGCTGTCGGCCCAGCAGACCTCACTGGAGATCATCGTCAACATGTGTTGCTCTGACGacCCGTCTGATGACGAGTGGGAGGAGCAGTCCAGCAGTGATGAAAGTGACCTCTGTACCGATGGCGTTTCCGAGTCATCCAATCAGCTGCTGTCCCCACTGTGTATGTCTGCGGAGGTGCACAACGCCCTGCTCAACCACAGTGTCCCTGAGAAGGTTCTGAAGAAGACCGAATTCCCCAGCAGTGCTGCAGTGGAGGCCTGTAACAAGAACCCGGCCTGGAAGGGCCTGGTGAAGAAGATGCAGCGGGTGCAGTGCCGGGCGCTCACCTGCCTGCACAACATGCTGTCCGTCATGGAGGTAGAGTCTCTGGGGGGGGTCACTGCCCTGCAGGCGCTGGCGGAACACCTCTCTAAACTGGTCTTCAGCACAGCAGACGAGTTCCTGGAGGCGATCACCAGCGCCCTGAGGTCTCTGTTACAGATCATGGCCTCCAAAAATATCCCACAGTGCATGAGCCCCCAGCAGCTGATGAGCCTGAGTGAGGTGGCGGCACAGTGTCAGACGGTCAGTGTGAGGGTCAATGCTCTGGCCATCCTGGGCATCACAGGCAGCACTCTGGCCAAAGAGCAGGACACGGCCAACAGCCTTCAGATGATCGGGACCTTCCTGCTGCAGGTGGCGTCCAAGGACTCCAGCCTGGTGGTGTGCGGGGAGGCTCTGGACGCTCTGTTCGATGTGTTCGCTGACGGAGCCGAGGCAGAGCGCGCCGCCAAGACCATCCAGCTGCTATCTGCACTCAAAGCCCTGCAGCCGGTCTTCAAAGCCAAGCTGCGTAAGGAAGGCAAGGGGAAGTATAGCCCAGACCAGCTGTGTGTGCTGGACAACATCAAGGTCAACCTGCGGAGGTTCATAGGGTATCTGGAGAAAAACTGCTCTTAACTCTGGCTGCTGGACTGACTGCACATGGACAGACATATaaatggagggagagagagagtgtgaggaAAGGGGACTGCAATCTGTACGACTGAACAGAAGAGAAAGATCCTGCAGCCAAAATGACTGATGGTTGCTGTGAGGGTCTCTGGTTTACTCCCCCATCCATTCAGACTGTGCAAAGTGTACTggactgttttttatttttggttttcggtttgttttgtttttatttcttaaaaaaaaaaaaaaaaaaactaattttgatttttagaaaataagGCATTgctttatgattaaaaaaagtgaGAAAAGTGGGATGGTTGCAATATTGCTACATTGAAGAAAGACATCTATTGCAAAAACTGAGCAAAATAAAGTCTTTAATATAA

Function

GO: NA

KEGG:

id description
K24812 HEATR3; HEAT repeat-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020317 True 2507 mRNA 0.57 15 16088956 16097553

Neighbor

gene id symbol gene type direction distance location
AMCG00020313 papd5 coding downstream 10251 16067413 ~ 16078705 (-)
AMCG00020312 NA coding downstream 52226 16012065 ~ 16036730 (-)
AMCG00020309 NA coding downstream 155278 15922293 ~ 15933678 (-)
AMCG00020308 NA coding downstream 187382 15893227 ~ 15901574 (-)
AMCG00020310 NA coding downstream 196908 15868506 ~ 15892048 (-)
AMCG00020323 LOC107577405,LOC104961177 coding upstream 360026 16457579 ~ 16469287 (-)
AMCG00020325 lonp2 coding upstream 375031 16472584 ~ 16473662 (-)
AMCG00020324 NA coding upstream 376720 16474273 ~ 16479633 (-)
AMCG00020328 sf3b3 coding upstream 437143 16534696 ~ 16548548 (-)
AMCG00020329 NA coding upstream 460989 16558542 ~ 16569600 (-)
G62283 LOC107575789 non-coding downstream 665382 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1054880 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1321393 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 1687654 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 2174790 13913172 ~ 13914166 (-)
G62475 NA non-coding upstream 382977 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 571344 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 582303 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 799317 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 889766 16987319 ~ 16989284 (-)
G62061 NA other downstream 1756549 14330522 ~ 14332407 (-)
G62011 NA other downstream 1957387 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 2254227 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 2275953 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 2280623 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1347 16098900 ~ 16102739 (-)
G62409 NA other upstream 21436 16118989 ~ 16120153 (-)
G62415 NA other upstream 155235 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 174898 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 518770 16616323 ~ 16624970 (-)

Expression


Co-expression Network