AMCG00020320 (LOC106560866,LOC107738740,LOC107686280,LOC107549643)


Basic Information

Item Value
gene id AMCG00020320
gene name LOC106560866,LOC107738740,LOC107686280,LOC107549643
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16254493 ~ 16274574 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020320
ATGGAAGATCCTCTGGTTTGGTTCGGGGCAGACACGGGGTTTAAGCCGCAGTTTGTGCGCTCAGTCCTGCAGCGGAACGGGATCCCAAACACGGCAGAAGCTGCAGACCGTCCCTGCGCCGCGCATCAGCTGCCAGGCGCCGGTGGCAGAAAGTTTGGGCTCCGGGAGGCGCGGACGGCCCGGCTCAGACTACCTGCGCGGCCGGCAGGGCCACTGAGGGCACGACGACCCCCGGCGGGCCGGCCCCGTGTGCTTTTATACAGTATAACTCCGCCGAGCACAGGCGTCGGAGGTCCGGGCGGTGCGCAGTGTATTTCCGGGTGCCGGGCTCTGTGGCGCTGGAGGATCCGCATCCCTGGCGCTGTGTCAGGGCAGAGCTGTGCGACAAACGGTAATAACGACCATCGTAACCGTCCGCGCTTTGTGTGCCCTGCAGCTGAGGGCGGGAGTGCGGGCTCGGGCATGGCGGCGGCGCTGCTGTcggaggcggagatccagcgcgGCTCCATGGCGGAGGAGGACCCCAACGGCAACCAGCACGGCCCGGCCGCGCAGAGCAGCAGGGCCCCGCGGTGGGGGCCGCAGCACGCCGGGGCCAGGCAGCTTGCGGGGCTCTACTCGCCAGACTTCGCCTCCGGCCTGGTGCACTGGGGAGCCGATACCTGGGGCTCAGTTGACATTCCGGTCATCGGCAAGGCTTTCATCAGGCCGTTCAGAGAGCATCACATCGACCCCACAGCCATCACCCGGCACGACTTCATCGAGACCAATGGGGACAACTGCATGATCACCATCCTGCCACTGGCTCACATGGCCTACAAGTTCCTCTGCTATTCTCCAGaggCCCTGGCCGATCTGTACCCCTGGGAGTGCTACGTGTTCGCCCTGGCCATCTTCGTCACCATGACCAACCAGATCCACAAGTGGTCGCACTCGTACTTTGGGCTGCCACGCTGGGTCACACTGCTGCAGGACTGCCACATCATCCTGCCCCGCAAGCACCACCGCATCCACCACGTCGCCCCCCACGAGACGTACTTCTGCATCACCacagGTTGGCTGAATTTCCCTCTGCACTGTCTGGGCTTCTGGCAGCGGATGGAGGGTCTGATCGAAACCGTGACCGGACACAAGCCTCGGAGCGACGACATGAAGTGGGCGCACAAAATGGAGACCGGCGTGACCTTCCTGCCGACTGGGGTCACAGGCAGCATCTCGCAGATGATGGACCaccaggagaggagaggagagagagcggaGACGGAGCACAGCCTGGAGAGTTGCCTGCGCGGGGCTCGGCAGCCAACACTACGCTGTTCAACATATCCTTCATGGCACAGTCGAactatacaaaaaacacaataa

Function

NR:

description
PREDICTED: transmembrane protein 189-like isoform X2

GO: NA

KEGG:

id description
K20656 TMEM189; plasmanylethanolamine desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020320 True 1365 mRNA 0.64 7 16254493 16274574

Neighbor

gene id symbol gene type direction distance location
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding upstream 17945 16232581 ~ 16236548 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding upstream 73580 16177608 ~ 16180913 (+)
AMCG00020318 NA coding upstream 99861 16149320 ~ 16154632 (+)
AMCG00020315 NA coding upstream 141588 16104368 ~ 16112905 (+)
AMCG00020311 NA coding upstream 242874 16003430 ~ 16011619 (+)
AMCG00020321 cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943 coding downstream 18920 16293494 ~ 16299985 (+)
AMCG00020322 NA coding downstream 145749 16420323 ~ 16434057 (+)
AMCG00020326 siah1,LOC106573709 coding downstream 176262 16450836 ~ 16452635 (+)
AMCG00020327 cog4,LOC107577202 coding downstream 275512 16550086 ~ 16557457 (+)
AMCG00020338 NA coding downstream 341842 16616416 ~ 16617243 (+)
G62398 NA non-coding upstream 153683 16098986 ~ 16100810 (+)
G62368 NA non-coding upstream 187677 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 830920 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 919437 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 956312 15297747 ~ 15298181 (+)
G62432 NA non-coding downstream 140904 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 227210 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 258782 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 273162 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 370364 16644938 ~ 16646261 (+)
AMCG00020281 slc12a4 other upstream 1781948 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2022225 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2303446 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2369377 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2381848 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 308312 16582886 ~ 16604658 (+)
G62632 NA other downstream 539800 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1159068 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1184570 17459144 ~ 17471869 (+)
G62895 NA other downstream 1653754 17928328 ~ 17928904 (+)

Expression


Co-expression Network